| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001291 |
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| Symbol | |
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| ID | 8559603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | - |
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| Start bp | 1469210 |
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| End bp | 1470946 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646408960 |
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| Product | choline/carnitine/betaine transporter family protein |
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| Protein accession | YP_003288439 |
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| Protein GI | 262396586 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.335478 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGCAA CATCTGGGAT ATTGAAAGGA CTCAATCCGA CTGTGACTAT CGCATCAAAG
ATCGTCGTTA TCGGTTTTGT ACTTTTCTGC GCCATTCTCG CCAACCAAGC GGGTCAATAC
TTCGAAACGA TTTCCGGCAT TTTGCTGCAG AATATGAAGT GGTTTTACAT CGGACTTGTT
TCACTCGTTG TCGGTTTTCT TCTTTACCTT ATGGTTAGTC GATATGGGCA TATTCGTTTG
AGTAAAGATA ACGAAAAACC AGAGTTTAGT TATTTGTCTT GGGTATCCAT GCTTTTTTCC
GGAGGCATGG GGATAGGCTT AATTTTCTGG TCGGTCGCCG AACCGATGTG GCATTACGCT
GACAACCCAT TTACTCAAGG CCTGACCAAT GAAGCCGCAA CAACATCAAT GAAACTGACA
TTCTTTCACT GGGGTCTACA TCCTTGGTCT GTCTTTATCA TTGTTGCACT CGCATTAGCT
TACTTTTCCT ACCGTAAAGA TCTGCCTTTT ACCCTACGCT CTATCTTGTA CCCTTTGATT
GGCGATCGTA TTTATGGGCC TATCGGGCAC ACGGTTGATA TCCTAACAGT CGCGGTGACT
GCTTTCGGTA TCTCTCAAAC CTTGGGGATG GGAGTTATCC AAATAAACTC TGGTTTGAAT
CAAGCCTTTG GTCTAGACAT TAGTTTGGGG ATTCAACTCT TTATTATCGT TTCCCTTTGT
ACTTGTGCGG TTGCGTCGGT GCTATCTGGT GTAGGGAAAG GTATTCGCCG TTTATCAGAA
TGGAACATGC TGCTTTCACT CGCACTCGTG CTGGTCGTAC TTTATATTGG CCCAACTCGC
TATATCTTAA ATACGCTACT TGAAAGCACG GGGCTTTATG CACAAAACAT TGTCGGTATG
AGCTTATGGA GCGATGCACA GAATGACTCT GGCTGGCAAA ACTGGTGGAC GGCTTATTAC
TGGCCTTGGT GGATGACTTG GGCACCTTTC GTTGGCATGT TTGTAGCTCG TATCTCTAAA
GGACGCACAA TACGTGAACT TATCGGTGGC GCATTAATCG TACCTACGCT AATCACGTTT
TTATGGATTT CAGTATTTGG TGGTGCAGCG TTGAAGGTAG AGCAAGACGC TCGTGTTGCT
CATCAAGAGC AAGTCACTGC GGCACAAGAA GCCAAACAAA CACCACCTGC GGATTTTTCT
GGCGGCCCGA TTCTTGAAGC GACTAAAGCT GATACGACAC GCGCTTTGTT TACGCTATTC
GACAATCTAG ATACAGGTAT GTTTGGTAAA CTACTTAGCG TACTTGCGTG TTTATTACTC
GGTACTTATT TCATTACCTC CGCTGACTCA GGTACCTTAG TTCTATGTAC CCTCGATGCC
GCTGGACACA GTGAGCCTCC TACGTCTATA CGGGTACTAT GGGGGATCAT GATCGCTGCC
ATTGCGGGAG TACTTCTATA CGCAGGAGGG TTAAAAGCAA TGCAAACGGC CTCCATTATT
GCCGGTTTCC CTATCGCCAT TTTTATCGCG GTGATGAGCT TAACGCTGTT CCATAGTATT
CGACGCGAAC CTAAGCCATG GGCAATGCTG CCTGAGCATG TTCACCCAGA GCAAGAGAAA
CTTGATGGTC CTGTTGAACC GCTTGTTGAA AGCAAAACAG TGGTTTCCGA GCCTATCGCT
TCAACATCCT CACTAAAAGA TGATTCCACA CTTAATCAGG GACCAGTACT AAGTTAG
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| Protein sequence | MRATSGILKG LNPTVTIASK IVVIGFVLFC AILANQAGQY FETISGILLQ NMKWFYIGLV
SLVVGFLLYL MVSRYGHIRL SKDNEKPEFS YLSWVSMLFS GGMGIGLIFW SVAEPMWHYA
DNPFTQGLTN EAATTSMKLT FFHWGLHPWS VFIIVALALA YFSYRKDLPF TLRSILYPLI
GDRIYGPIGH TVDILTVAVT AFGISQTLGM GVIQINSGLN QAFGLDISLG IQLFIIVSLC
TCAVASVLSG VGKGIRRLSE WNMLLSLALV LVVLYIGPTR YILNTLLEST GLYAQNIVGM
SLWSDAQNDS GWQNWWTAYY WPWWMTWAPF VGMFVARISK GRTIRELIGG ALIVPTLITF
LWISVFGGAA LKVEQDARVA HQEQVTAAQE AKQTPPADFS GGPILEATKA DTTRALFTLF
DNLDTGMFGK LLSVLACLLL GTYFITSADS GTLVLCTLDA AGHSEPPTSI RVLWGIMIAA
IAGVLLYAGG LKAMQTASII AGFPIAIFIA VMSLTLFHSI RREPKPWAML PEHVHPEQEK
LDGPVEPLVE SKTVVSEPIA STSSLKDDST LNQGPVLS
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