| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001218 |
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| Symbol | |
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| ID | 8559530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | + |
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| Start bp | 1377872 |
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| End bp | 1380286 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646408887 |
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| Product | CsuD |
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| Protein accession | YP_003288366 |
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| Protein GI | 262396513 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAAGA TTTTATATCT ATCTTGTTTA TTTACCAGTA TGACGCCTGG CGTGGGTTGG
TGCGACAACG TAGTGACCCA TTTATCGCAG TTACCTAGTC CTGAAAACTT TTCTTATGAG
AACTTTGAAA ATATTCATTT GTCGTTAGAA CTAGTAATTA ATCAACGACC GACTGGTTTA
ATCGCGGATG TTGAACGTAA AGGCGAGCGC TACTTCGTGT ATAGAGACGA TTTACTGTCT
GCTGGCGTGG TCGCGGATGT ATTACCTGGG ACGCAAGAGA AGTTAGACAT AACATCAATA
TCGGGTGTAG AGGTCGATTA TTTGCAATCG TCACTGCAAT TATTAATCAC AGTGCCTCCT
AATTGGTTGC CGATGCAACG CTTTTCTGCG CAGAACAGGA GGCGTTTTTC GCCCGCTAAA
TTCGGAACTG GTGGGTTATT TAATTACAGT GTGTTTGGTG TTTATGATCA CGATAGTAGT
CAAAAAGAAG TATCTATTAA ACACGAATTG AGAGCCTTTT CCGAATTCGG CGTACTTTCT
ACGACGGGAA TATTTAAATC TAACCTTCAT CGAGACGTTC AAGCGCAACA AAGTAATAAA
TATACGCGCT TCGACACGAG GTACGAATAT GTTGATCAAA GTCGTCGATT GCGCTTTGAA
GTAGGGGATT ACATTGTGAG GCCCCTTGCG TGGAGTCAAC CAGTTCGAAT GGCTGGTATT
CAACTGTCAC ATGACTTCTC TATGCGTCCA GACGTGGTTA CCGCACCTTT ACCTGCATTT
TATGGCGAAG TAACTGCTCC CACGACGTTA GATTTATTTG TAAACGGATT AAAAACCGAT
TCAATGTTTG TGGGGCCGGG ACCGTTTGTT ATCAATGATA TTCCAATGGT ATCGGGAGCT
GGTGAAGCGA CAGTGATTGC AACGGATGCC CAGGGAAGGC GGACTGCAAT GACCAGTCCA
TTTTTCCTTT CAGCTAACTT GCTGAAGGCT AACTATACCT CTTACAACGC TAGTTTTGGT
GCTTTACGCC GAAACTATGG CAACGCTTCA AATGACTATG GCGATGGTGC TGTTGTCGCA
GCTGCGAGGC ACGGAATGAC AAACTGGCTA ACGTTGGAGG CACAAACCGA AGCGAAAGAT
GACTTAATTG TTGCGGGAGT CGGTTTTGTT ACCAACCTAT TCAATATGGG AACGATTGAT
GGGGCGGTAA GGTTTAGCAA TTATGAGCAG AGAGCGAGTT CCTATTCAGT TGGTTATAGT
TATCAATCTC GAATGTTTAG CTTTGCCGCT CGTACCCAAG TTGAGAGCGA GGGATTTTAC
ACCCTCTCCC AAACACCAGA GAGCTTGAGA AGTGACGGCA CTAACGAGCG AGAGAATTTG
TCTCGGCATG TCTCTCAGAT AAATGTTGGC GCCCGGCTGA ATGAGTTGGG TTCGTTATCA
GGGGGATACT TTGATGTTCA GCAAACCGAC TCTCGATCGA GAATACTTAA TGTAACTTAC
AGTCGCTCGC TTCCGTTCGA TATCAACATG TCATTATCGT TTAATCGGAG CATAGGTGGA
GAGGCCGTTA CGCTAGCACA ATTCTCATTA CCTTTGAGCG CCTTCTCTGG TAGCGCGGGA
TTAACCATGA AGCGTGAAAG CGATGGTCAT CTTAGTGGCC GTGCTAGTGT TAGTCGACTT
GCGCCGATTC GAGGTGGTTG GGGAATCAAC TTAGCGCATG ATATTAATGA AAAGCCTGAC
AATAGAAAGC AGGCCGATGT TACTTACCGA GCCTCTTGGG CGGAGTTCCG AGCGGGCTTA
AACGGGACGA GTGGTAATTA CGATTATTTT GCCGAAATGT CGGGTTCGGT TGCGTCACTC
GATGGTGAAA TATTCCCTGC AAATAATGTG TACGATAGTT TCGCTGTTGT CAGTACTAGC
GGTTTTGAAG GTGTGCCCGT CAAATATGAG AATCAAGTCG TTGGATTGAC TGATGATGAC
GGTTACTTAC TTGTGCCGTG GGCAATGGCA TATTACACCG CAAAATATGA AATTGATCCG
CTTAGATTAC CAGCCAATGC TTTTTTCCCA ACAACAGAAC AATACGCGTC GATACATTCT
GGGTACGGCT ATTTGCTCGA GTTCCCAATA GCTTTGCAAG TTGCGTTGAG TATGGAGGTT
GTTGATGAAA ATGACGCCTA CTTGCCGTTA GGAACTTATG GTCAATCAGA TACTGGAGTG
GTTGGGCAAA TTGGTTGGGA TGGAGTAACG TATTTTGAGG GGCGTAATGT AGGTGAGTAC
ATTATCTTTT ACCCCGAAGG CTTTCCACCA TGTAAAGTAT TTATAACGGG ACTCTATCAA
ACGCGGAGCG AGAAAATACA GACATTAGGT AAACAAGTCT GCACGAAAGA GCAAAAAGCA
GAGGTACAAT TATGA
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| Protein sequence | MNKILYLSCL FTSMTPGVGW CDNVVTHLSQ LPSPENFSYE NFENIHLSLE LVINQRPTGL
IADVERKGER YFVYRDDLLS AGVVADVLPG TQEKLDITSI SGVEVDYLQS SLQLLITVPP
NWLPMQRFSA QNRRRFSPAK FGTGGLFNYS VFGVYDHDSS QKEVSIKHEL RAFSEFGVLS
TTGIFKSNLH RDVQAQQSNK YTRFDTRYEY VDQSRRLRFE VGDYIVRPLA WSQPVRMAGI
QLSHDFSMRP DVVTAPLPAF YGEVTAPTTL DLFVNGLKTD SMFVGPGPFV INDIPMVSGA
GEATVIATDA QGRRTAMTSP FFLSANLLKA NYTSYNASFG ALRRNYGNAS NDYGDGAVVA
AARHGMTNWL TLEAQTEAKD DLIVAGVGFV TNLFNMGTID GAVRFSNYEQ RASSYSVGYS
YQSRMFSFAA RTQVESEGFY TLSQTPESLR SDGTNERENL SRHVSQINVG ARLNELGSLS
GGYFDVQQTD SRSRILNVTY SRSLPFDINM SLSFNRSIGG EAVTLAQFSL PLSAFSGSAG
LTMKRESDGH LSGRASVSRL APIRGGWGIN LAHDINEKPD NRKQADVTYR ASWAEFRAGL
NGTSGNYDYF AEMSGSVASL DGEIFPANNV YDSFAVVSTS GFEGVPVKYE NQVVGLTDDD
GYLLVPWAMA YYTAKYEIDP LRLPANAFFP TTEQYASIHS GYGYLLEFPI ALQVALSMEV
VDENDAYLPL GTYGQSDTGV VGQIGWDGVT YFEGRNVGEY IIFYPEGFPP CKVFITGLYQ
TRSEKIQTLG KQVCTKEQKA EVQL
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