Gene VEA_001089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_001089 
Symbol 
ID8559402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013457 
Strand
Start bp1241898 
End bp1245887 
Gene Length3990 bp 
Protein Length1329 aa 
Translation table11 
GC content49% 
IMG OID646408760 
Productputative pullulanase precursor 
Protein accessionYP_003288239 
Protein GI262396386 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases 
TIGRFAM ID[TIGR02103] alpha-1,6-glucosidases, pullulanase-type 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGACAATA AGACATTTAA ATTATCAACA ATTGCCAAAA CCGTACTGCC TTTGATTTCC 
GTCGCAGTCA TCAGCGGTTG TGGTAGTGAT AGCACGAACG AAGATACGAC GAACCCAGGC
TCAGGCTTGT ACCCTGCGGG AGAGAACGAG GTCGTCATTT ATTACAAACG CGATGTGGCG
TCCGCTTCAA CGGCCAGCGA CTACGAAGGT TGGGGCTTGC ACCTGTGGAA CGGTGAAGGC
TGTACCAGCA CAGATTTAGA CGCAATGGGC ATTCCTGGCA CAGGAACGGA TTGGTCGGCA
CCGCATCCAT TCGATGGCAT CAACGACACC TACGGTGCTT ACTACGTACT GAAAGTGAAC
CCAGATGCCT CTGACCCACA CGAATGCATG AACTTCATTC TGCACAAAGG TGATGAGAAA
GCATTCGGCA GTGCAAACTC AAAAGTGGAG CTGACGAAAA TCGGCGAATC TAAAGGGTTG
TTTGGCTTCC ACGGCAGCAG TGAGCTTTAC TACGAGCCAA TCGAAGAACG CCCTGTTGAT
ATTGATGGTC AAAAAGCGCA TTGGCTAGAT GCCAACACCA TCGCGTGGGA AGCGGTGGCC
AATGCGGATT CCATGAAGCT GTTCTACAGC CTCAGCAACG ACATTAAAAT GGATGAAGAC
AAGCAAATCT CCGGTGGCAC GGCGGTTGAG TTGACGAAAG CAGGTGATTT ATCTGATGGT
CTGAAATCAC GCTTCCGTCA CCTTGCTAGC CTCCAAGCTG CAGGCATTGA TGTCGATGAC
GCGACTCTAC GCACGATCCT GAAATCACAA ATCGTTATGG TAGCTTACAA CGCAAATGGT
GACGTCATTT CTGCAACTGA AGTGCAAAAG CCGGGCGTTC TCGATGCAGT ATTTGCCGAT
TCCAAGGCAG GTAACGCGAT TGGTCAAGAA CTCGGCGCAA TTGTGGAAGG CGGTGCCGCA
ACCTTCAAAC TATGGGCACC AACTGCCCAA GATGTTGATC TGATAATCTA CGATGAAAAC
TTAGCAGAAG AAGCGACCGT TGCCATGACG GAAGACCCAG CAACAGGTAT CTGGGTTTCT
GAGGCACAAA GCAACGTTGT CAACAAATAC TATCGCTACC AAGTTAAGGT ATACCACCCA
ACAACTGGCG TCGTTGAAAC GCGTTTGGTA ACAGACCCAT ATTCAATGAG CTTGTCTAAA
AACTCGCGAT ACTCGCAAGT GGTTGATTTA GATGATCCAA GCTTAATGCC TCAAGATTGG
AAAAACTACG CACGCCCAAT GGTTAAAAAA GACGAAGACC ACGTCCTTTA CGAGTCACAC
ATTCGTGATT TCAGCTTTAA CGACAGCAAA GGCACGCCAA GTCTTGATGG CAAATATCTT
GCCCTTACAG AATCTGAGCG TGAGTCTGTT TCTCACTTAC AAGCCTTAAA AGATGCAGGC
CTAACAACGC TGCATATCCT GCCAGCATTT GATATTGCAA CCGTGGATGA AGACGCTGAC
CAGCGAGTCG ATATCACCGA CACCGTGGGT AAACTTTGTG GCATCAAGCC AGAAGCCTCC
ATTTGTGAGA CCGAAGATGA CGGCAAAGTG ATTGAAGAGG TATTAAATAG CTACGACCCA
ACAACGGGCA AAGCACAAGC GTTGATGAAC GATCTTCGCA TGCTAGACAG CTTCAACTGG
GGTTACGACC CATACCACTA CACTGTACCA GAAGGCAGTT ATGCGACCGA TCCTAACGGT
TCTAAACGTA TCCTTGAGTT CCGCGAAATG GTGCAAGCGA CGCATAAAAT GGATCTGAAA
CTGGTCATGG ACGTGGTGTA CAACCACACG AATGCATCCG GTGTGAACGA AAAATCAGTA
CTGGATAAAA TTGTCCCTGG GTACTACCAC CGCCTAAACG TCAACACTGG CGGCGTAGAA
AACTCAACCT GTTGTGATAA CACCGCCACC GAAAACCTAA TGATGGGTAA ACTGATGGTT
GACTCATTGA TGGTGTGGGC GGATGACTAT AAAGTCGATG GTTTCCGTTT TGACCTTATG
GGCCACCAGC CGAAAGATGT CATGGTCTAC GCACTTGAAA AAGTCCGTGA AATTGATCCG
AATACTTTGT TCTACGGCGA AGGCTGGGAC TTCGGTGAAG TTGCGCAAAA CGCTCGCTTC
GATCAAGCGA CACAAGTCAA CATGGCGGGG ACAGAAATCG GTACTTTCTC TGATCGTCTG
CGTGACGCAG TTCGTGGCGG AAGCCCGTTT GATGGTGGTG TAGATTCTGA AGGTAAGCAC
CCACTTCGCT TCAACCAAGG CTTTGGTAAC GCCGCTTACC CGAACGAAGA AACTAAAACT
GATGCAGAAT CTGTGAATGG CCGCCTACAC AACCAAGATC TGGTTCGTCT AGGTATGGCT
GGTAACTTAG CTGACTACGT CCTTCTGGAT TACAAAGGCG AAACCAAACT TGGTAAGAAT
GTTGATTACA ATGGTGCTCC AGCAGGCTAC ACAAAAGTGC CATCAGAGAA CATTTCCTAC
GTGTCTAAGC ACGATAACCA AACGCTGTGG GACAACAACG CTTACAAGAT TGCGACAGGT
ACTTCATCTG CTGAACGCGC ACGAATGCAG TCTGTATCAC TATCAACGGT GATGCTAGGT
CAAGGTATTC CGTTCATTCA CATGGGTTCT GAGCTATTGC GCTCTAAGTC AATGCAGCGT
GACTCGTACG ATTCTGGTGA CTGGTTCAAC CGTGTATTCT TCGATGGAAG CGACAATAAC
TGGAACGTTG GTCTACCACG TGAAGACAAA GACGGTGCAA ACTGGGAGTT GATCAAAACC
ATCGTCGGTG ACAGCACGGC GAAACCAGAC TCAACGGACA TCGAGCTGAC TAAGCAACAA
TTCCTAGAGC TACTAAAAAT CCGCAGTACA AGCGAACTGT TCCGCTTAGA CACCGCGCAA
GAAGTGATGA ACCGTGTTGA CTTCCGCAAC GTAGGGAAAG ACCAAGTGGA AGGCTTGATT
GTGATGTCTA TCGACGATGG CACATCAGCA GGTGCCGATT TGGATTCGAA CTACGATGCG
ATCGTGGCCG TTGTGAACTC AACATCAACT GAGAAATCTT TCAAAGTTGC TGGCGCTACT
GGTTTCGAGC TGCATGAAGT TCAACAAAAC TCTGCGGATG ACATCGTGAA AGGTGCAAGC
TTCGCCAATG AAACATTCAC AGTACCAGCA CTGACAACAG CGGTATTCGT ACAGCCACAA
GACGGCGCGC AAGGTGCAGG CCTACCAGTA AACACGGATA ACAAAGACGT ATCGAGCATT
CCTCCTTACG GCGAAACTGT GGTTTACGTC AAAGGCACCA TGAACGAGTG GTCAGATAGC
AGTGACTGGG CGATGACCTT TATTGGCAAC GGCATGTACT CTGTAACTGG CGTTCTTGAA
GCAGGTGAAC ACGAGTTCAA ATTTGCGGAC TCAGGATGGG CAAATCCAAA CATCGGTTGT
GATGCTGCGG ATTTGGCTTC TGGCTCACTA GACTTAGGCT CTGCGGGGAA CTGTACGTTG
TCTGTCGCTG AAACTGGTAA GTACAACTTC ACTCTGAACG CGTTACATGT GCAAGATGAA
AGCGTAGAAA AACCTGTCGT TTCAGTGACC AAGTCAGCAG ATGCACCAAC GTTCGGTGAA
AGAGCACTTT ACCTACGTGG CACTATCACC ACATGGGATA CGCCAGCGCA AGACTCAACT
GCGAAGTTCA GCTATGTAGC AAATGACGTT TACTCGCTAG ACATTGACCT AGCGGCGGGC
AACTACGAGA TGAAAGTGGC GAGCGCAGAC TGGGCAGCAG ACACCAACTT CGGTGGCGAA
GGCAGTGTTG AGCTTGGTAA AGCGCTAACG ATGGAAGTCG GTGGCGGTAG TGCAAACCTG
AAAATTGCGA TTGCAGAAGC AGGAAATTAC AACTTCCACT TCAACGCGGC TGACAAGTCG
GCGCCAATCG TGACGGTAAC GAAAAACTAG
 
Protein sequence
MDNKTFKLST IAKTVLPLIS VAVISGCGSD STNEDTTNPG SGLYPAGENE VVIYYKRDVA 
SASTASDYEG WGLHLWNGEG CTSTDLDAMG IPGTGTDWSA PHPFDGINDT YGAYYVLKVN
PDASDPHECM NFILHKGDEK AFGSANSKVE LTKIGESKGL FGFHGSSELY YEPIEERPVD
IDGQKAHWLD ANTIAWEAVA NADSMKLFYS LSNDIKMDED KQISGGTAVE LTKAGDLSDG
LKSRFRHLAS LQAAGIDVDD ATLRTILKSQ IVMVAYNANG DVISATEVQK PGVLDAVFAD
SKAGNAIGQE LGAIVEGGAA TFKLWAPTAQ DVDLIIYDEN LAEEATVAMT EDPATGIWVS
EAQSNVVNKY YRYQVKVYHP TTGVVETRLV TDPYSMSLSK NSRYSQVVDL DDPSLMPQDW
KNYARPMVKK DEDHVLYESH IRDFSFNDSK GTPSLDGKYL ALTESERESV SHLQALKDAG
LTTLHILPAF DIATVDEDAD QRVDITDTVG KLCGIKPEAS ICETEDDGKV IEEVLNSYDP
TTGKAQALMN DLRMLDSFNW GYDPYHYTVP EGSYATDPNG SKRILEFREM VQATHKMDLK
LVMDVVYNHT NASGVNEKSV LDKIVPGYYH RLNVNTGGVE NSTCCDNTAT ENLMMGKLMV
DSLMVWADDY KVDGFRFDLM GHQPKDVMVY ALEKVREIDP NTLFYGEGWD FGEVAQNARF
DQATQVNMAG TEIGTFSDRL RDAVRGGSPF DGGVDSEGKH PLRFNQGFGN AAYPNEETKT
DAESVNGRLH NQDLVRLGMA GNLADYVLLD YKGETKLGKN VDYNGAPAGY TKVPSENISY
VSKHDNQTLW DNNAYKIATG TSSAERARMQ SVSLSTVMLG QGIPFIHMGS ELLRSKSMQR
DSYDSGDWFN RVFFDGSDNN WNVGLPREDK DGANWELIKT IVGDSTAKPD STDIELTKQQ
FLELLKIRST SELFRLDTAQ EVMNRVDFRN VGKDQVEGLI VMSIDDGTSA GADLDSNYDA
IVAVVNSTST EKSFKVAGAT GFELHEVQQN SADDIVKGAS FANETFTVPA LTTAVFVQPQ
DGAQGAGLPV NTDNKDVSSI PPYGETVVYV KGTMNEWSDS SDWAMTFIGN GMYSVTGVLE
AGEHEFKFAD SGWANPNIGC DAADLASGSL DLGSAGNCTL SVAETGKYNF TLNALHVQDE
SVEKPVVSVT KSADAPTFGE RALYLRGTIT TWDTPAQDST AKFSYVANDV YSLDIDLAAG
NYEMKVASAD WAADTNFGGE GSVELGKALT MEVGGGSANL KIAIAEAGNY NFHFNAADKS
APIVTVTKN