| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001004 |
|---|
| Symbol | |
|---|
| ID | 8559317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 1138041 |
|---|
| End bp | 1139666 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646408675 |
|---|
| Product | oligopeptide ABC transporter periplasmic oligopeptide-binding protein OppA |
|---|
| Protein accession | YP_003288154 |
|---|
| Protein GI | 262396301 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTA AAAAACATTC AACGGCGTTG CTGATTTCCT CTTTATTCAC CCCTTTTCTT
GCTACATCAG TTGCTGCGGA GACCTTACCT AAAGGCATTC AACTTGCCGC AGAACAGCAT
TTAGTACGTG CGAATGACGC AGAGGCGGCG ACGCTTGACC CTGCGAAAGC CGAAGGTCTG
CCAGAAATGC ATGTGATTCG TGACTTATTT GAAGGGCTTG TGATTCAAGA TCGTGACGGA
AACATCATTC CCGGTGTGGC AGAATCATGG GAAACCAACG ACAACCAAAC CTTTACTTTT
CACTTGCGCA AAGAAGCGAA ATGGTCGAAT GGCGAGCCTG TGACGGCGGA GGATTTTGTC
TATTCACTGC GCCGAGCGGT AGATCCGAAA ACCGCTTCTC CAAATGTTTG GTATCTCAAA
CTCACCAAGA TCAAAAACAT CGCCGATGTA GCAGAGGGCA AAAAGCCTTT GGACGAGCTC
GGTATCAAGG CGGTGGATAA ATACACCCTA CGTTTTGAGT TGGACAGTCA AGTTCCGTAC
TTTGTCGCCA TGACTGGGTA CACTTCCATG ATGCCAGTGC ATCAAGCGAC AGTGGAAAAA
CGCGACAAGC CGTGGAGCGA TCCAGACCAA TTTGTTGGCA ATGGTGCATT CACACTGGAT
AAGTGGGTCG TGAATGAGCG CATTGAACTG GTTAAGAGTC CAAGTTACTG GGACAGCGCA
GATACGCATC TAAACAGAGT GACTTACATT CCGTTTGAAA ACCAAAACGC GTCGATCAAT
CGTTATGCGG CAGGAGAGTT GGATATCACG TCAGATGTGC CGACTCATAT GGCGCAGAAG
CTTAAACAAG ATTACAAGCA GGCTTACACG GTGGTGCCAT TGTTGTGCAC GTATTACTAC
GCGTTCAATA CCACTCGTCC GCCATTTGAT GATGTGCGAG TGCGTCAAGC GGTGTCGTAC
TCCATCATGC GTGATGTGAT TACGAATGGT GTCACGCAAG TGGGTAACCT TCCTGCTTAT
ACCTTTGCGC ATCAGTACAC CGCCGGGTTT GATGCGACGC CGCCTGAATA CAGTAAGTGG
AGTCAGCAAC AACGTGACGA GAAAGCGCGT CAGTTGTTAA AAGAAGCGGG TTACAGCAAA
GACAAGCCGC TCGATTTTAA ATTGCTGTAC AACACCAGTG AGGCAAACAA ATCGATCGCG
GTTGCGATAG CGTCGATGCT ACAAAAAAAT CTCGGTGCAA ACGTGGAGTT AGAAAACCAA
GAGTGGAAGT CGTACTTAGT GGCGCGTAAA CAAGGCAATT TCGATGTGAT GCGTGCTTCC
TGGTGCGGTG ATTACAATGA AGCGTCTACT TTCCTGAGCT TACTTCGCTC AGGTTCTTCG
GGTAACTTTG CACGTTACAG CAGTGAAGCG TATGACAACG CGATGAACAG TGCATTGGCT
GCAACTAATG AGAAAGCGCG CCAAGGATTT TACGATCAAG CTGAACAGTT GCTGGCGACA
GATATGCCTA TCGCGCCAAT CTATTACTAC ATGCAAGCAC GTTTGGTTCG TCCAACCGTG
GGTGGCTTTG CAAAGAATAA CGTAGAAGGG CGCATCTACT CGAAAGATCT CTACATCAAG
AAGTAG
|
|---|
| Protein sequence | MDFKKHSTAL LISSLFTPFL ATSVAAETLP KGIQLAAEQH LVRANDAEAA TLDPAKAEGL
PEMHVIRDLF EGLVIQDRDG NIIPGVAESW ETNDNQTFTF HLRKEAKWSN GEPVTAEDFV
YSLRRAVDPK TASPNVWYLK LTKIKNIADV AEGKKPLDEL GIKAVDKYTL RFELDSQVPY
FVAMTGYTSM MPVHQATVEK RDKPWSDPDQ FVGNGAFTLD KWVVNERIEL VKSPSYWDSA
DTHLNRVTYI PFENQNASIN RYAAGELDIT SDVPTHMAQK LKQDYKQAYT VVPLLCTYYY
AFNTTRPPFD DVRVRQAVSY SIMRDVITNG VTQVGNLPAY TFAHQYTAGF DATPPEYSKW
SQQQRDEKAR QLLKEAGYSK DKPLDFKLLY NTSEANKSIA VAIASMLQKN LGANVELENQ
EWKSYLVARK QGNFDVMRAS WCGDYNEAST FLSLLRSGSS GNFARYSSEA YDNAMNSALA
ATNEKARQGF YDQAEQLLAT DMPIAPIYYY MQARLVRPTV GGFAKNNVEG RIYSKDLYIK
K
|
|---|
| |