| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000939 |
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| Symbol | |
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| ID | 8559252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | + |
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| Start bp | 1069838 |
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| End bp | 1071517 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646408610 |
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| Product | pseudouridylate synthase LSU rRNA-specific |
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| Protein accession | YP_003288089 |
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| Protein GI | 262396236 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00612543 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACTCGC CTGAACATTG TTTTACACGT TTTACTGCTG ATACTTCTGA CTATGAATTA
CCAACGCAGT TTACGTTTCC GTTCTACTAC ACGCCGCATC CTCTTTGCGT TATGGCCGCA
AAGCAATTGC AACAGCACTT ATTAGCGCAA ACCGACTTCG AACACGATTT TGGTTTGGTT
AATGAAGAAA CGGGGCGAGG CAAAATGTTT GGCGTATTGC TGGTAAAAAG CCCTCAAGGC
GAGCTCGGCT TTTTAAGTGC GTTTTCTGGC AAAATTGCCG ACCAAAACTT GATTCCAAGA
TTTGTCCCTC CTGTGTACGA CATGCTGACC GATGAAGGCT TCTTCCGCGC AGAAACGGAT
GCCATCAACG CCGCCAATGC GGAGTACAAA ACCTGTGCTG CGAATCCGGA ATTGGCAGAT
CTTAAAGCGC AAATCCAAGC CGACCGAGCC GCTTATCAGC AAGAAGAGCA AACACAGCGC
CAAGTGATGA TAGACGGCCG CGCCGCACGC AAACGACAGC GCCAACAGGG CGAGCAAACA
CTCAATGCCG ATGACCTCAA AATCTTGTTG GATGAGTTGG GTAAACAAAG TGTCGCCGAG
AAAAACGCTC TCAAATACTT AAAGCAAGCG TGGGATGAAA AGCTTGCAAT CAAAGAAGCA
CGATTGGCCG AGTTAGAGCA GCAACTTGCT CACCTTAAAG AGCAGCGCAA GACGCTCTCC
AACGCTTTAC AGCACAAACT GCATAAACAA TACCGCTTCC TAAACAGCCA TGGCGAAGCA
CGCGACTTGG TGGACATTTT TGCGGACACC ACAAACCCAA TACCACCAGC AGGTGCAGGG
GAATGTGCTG CGCCAAAACT GCTCCAATAC GCGTTTAAAT ACGGATTCAA ACCGCTGGCG
CTGGCAGAGT TTTGGTGGGG TGTTTCGCCA AAATCTGAAG TTCGCCAACA CAAAAAATTC
TACCCATCGT GCAACAGCAA ATGTCAGCCG ATTTTGGGCC ATATGATGCA AGGGCTGGAT
GTCGAACCTA ACCCATTGGC GGAGAATTGG GCAGAAGACA AAGAACTAGA GATAATCTAC
CAAGACGACG CTATGGTCGT CGTCAACAAG CCAACGGGCT TACTTTCAGT GCCGGGTAAA
ACTATCAAGG ACTCTGCTTA TACGCGCTTA CAAGCGATGT TCCCTGATGT GGAAGGGCCG
TTTGTGATTC ATCGCCTCGA CATGGCGACC TCTGGCATTT TGGTGTTTGC CTTAACTAAG
CGCGCGAACA AAAGCCTGCA AAAACAGTTT ATGGCTCGCG GCGTACAAAA ACGTTATATG
GCACTGCTCG AAGGCGTATT GAACGAGCCG GAAGGGGAAA TTTCACTGCC AATGCGTGGT
GACCCAGATG ACCGCCCACG TCAACTGGTG TGTTTTGAAC ACGGGAAACA TGCAGAAACC
TACTGGCAGC TGATTGAAGT CAAAGATGGA CGCAGCAAGG TATACATGTA TCCGAAAACC
GGGCGAACTC ACCAACTACG TGTACACAGT GCTCATCATA TGGGATTAAA CATGCCAATG
GTTGGTGATG GTTTATACGG CGAAAAAGCG AATCGCTTAC ACCTGCATGC TGAGATGCTA
GAGCTGGATC ATCCATACAG TAAAGAGCGC ATGGTGTTCA AAGCTGGGTG CGAATTCTAA
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| Protein sequence | MHSPEHCFTR FTADTSDYEL PTQFTFPFYY TPHPLCVMAA KQLQQHLLAQ TDFEHDFGLV
NEETGRGKMF GVLLVKSPQG ELGFLSAFSG KIADQNLIPR FVPPVYDMLT DEGFFRAETD
AINAANAEYK TCAANPELAD LKAQIQADRA AYQQEEQTQR QVMIDGRAAR KRQRQQGEQT
LNADDLKILL DELGKQSVAE KNALKYLKQA WDEKLAIKEA RLAELEQQLA HLKEQRKTLS
NALQHKLHKQ YRFLNSHGEA RDLVDIFADT TNPIPPAGAG ECAAPKLLQY AFKYGFKPLA
LAEFWWGVSP KSEVRQHKKF YPSCNSKCQP ILGHMMQGLD VEPNPLAENW AEDKELEIIY
QDDAMVVVNK PTGLLSVPGK TIKDSAYTRL QAMFPDVEGP FVIHRLDMAT SGILVFALTK
RANKSLQKQF MARGVQKRYM ALLEGVLNEP EGEISLPMRG DPDDRPRQLV CFEHGKHAET
YWQLIEVKDG RSKVYMYPKT GRTHQLRVHS AHHMGLNMPM VGDGLYGEKA NRLHLHAEML
ELDHPYSKER MVFKAGCEF
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