Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_000503 |
Symbol | |
ID | 8558808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | - |
Start bp | 602681 |
End bp | 605599 |
Gene Length | 2919 bp |
Protein Length | 972 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 646408167 |
Product | inner membrane efflux transporter of RND family multidrug efflux pump |
Protein accession | YP_003287654 |
Protein GI | 262395801 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTCAA AGAGCGCGAA CGATGGCTCA TACAGCCTAA ATGTCACGTT CGATGTCGGG ACCGATCCAG ACATGGCGCA AGTAAACGTG CAAAACCGTG TGTCACAGAT CGAGTCAAAA CTGCCTCAAG AAGTGCGCAT GGTTGGTGTG ACGGTGAAAA AACGCTCACC TGACTTGCTG ATGGTGCTTA ACTTCTATTC GCCTGATGGC AAATACGACG ATCAGTTCTT GATTAACTAC ATTAACTTGA ATGTAAAAGA TCAGCTCGCT CGTGCGAAAG GCATTAGTGA AGTTAACGTG ATTGGTGGTG GCGAATACGC AATGCGTGTT TGGTTAGATC CGGAAAAAAT GGCCAACCTT AAGCTAACCA CGTCAGACGT ATACGCCGCT TTGGCTGAAC AAAACGTTCA AGTTGCGGCA GGGCGTGTTG GTGCAGCACC ATACAACAAT CCGCAAGAAG TTCAGTTTAA CCTTGTGACC AAAGGTCGCT TGGAAAGCGT GAGCGAGTTT GAGAACGTTG TCCTTCGAGC TAATCCAAAT GGTTCCACGG TTTATCTGAA AGATGTCGCT CGTGTCGAAC TAGGTAAAAA GTTCTACGAT GGTAACGGTA AATTCCGTGG TCAGGACGCG TCAATTGTTG CATTGTCTCT TCAATCGGAT GCGAACGCGT TAGAAAGTGG TCAGGCCGTC ATGGAGCTGC TTGAGGACTT GAGTAAAAAC TTCCCTGAGG GCATGGCGTA TGAGACCAGC TACGATACAA CCGTGTTTGT ATCTGAATCG ATCAAAGGGG TAGTCAAAAC ACTGATTGAA GCGATTCTAT TGGTGATTGC TGTAACTTAC TTGTTTTTGG GTAGCGCGCG CGCAACGTTG ATTCCTGTTG TTGCGATCCC CGTTTCTCTG ATTGGTACGT TTGCCATCAT GCAGGCGACG GGCTTCACCA TCAATACGGT CACTTTGTTT GGCTTGATCC TCGCGATTGG TATCGTGGTG GACGATGCGA TTCTGGTTAT CGAAAACGTC GATACCACCA TGGCGAAAGA CCCAACCATT TCACCGCGTA AAGCGACATT GCTAGCGATG AAAGAAGTAA CGGGCCCAAT CATCACGTCG ACCTTGGTTC TACTTGCGGT ATTCATACCA GTCGCGATGC TGCCGGGTAT CACTGGAATC ATGTATCGCC AGTTCGCTTT GACCATCTGT ATTTCGGTTG TGATCTCATC CATTAACGCA TTGACGCTGT CTCCAGCACT TTGTTCTTTG GTATTGAAGC AGGGTGGGGG CAACACGGCT AACTGGTTCC AGGCTTTCAA CCGAGGCTTA GAGCGTATCA CAACGCGTTA TGGTCAGGTC GCTGGTTTCT TGGTGAAGAA ATCTTTGCTA CTCGTGACGT TCTTTATAGT CGCTATCGCG GCGGTCACTT TCTTTGCGAA AACCACCTCA ACAGCGTTTG TTCCTCAAGA AGATAAAGGC ATTTTGCTGG TTAACGTTCA GCTGCCAGAT TCAGCTTCTT TATCTCGTAC TGAAGAAGTC ACCAATGATT TAATGAACAT GATTGGTGAA GAACCTGGTG TGGATGGCGT GACGGTTGCA AACGGTTACT CGTTTATGAC AGGCGCAGCA GCATCAAACG GTGCATCTGT GTTTATCAAA CTGCATGACT GGGATACTCG TAACTCGTTG CAAGGGGAAC ACTCTGCCAA TGCCATCGCG GCGCGTATTA ATGGCCGAGC GGCGACAGAG TTGCCTCAAG CGGTTGTGTT TGCGATGGGA CCTCCGGCGG TTCCTGGTAT GGGCGCTGCG TCTGGTTTTG AGTTTGTGCT TGAAGATACG CTAGGGCGAA GCCGTACCGA TTTGTCGATG GTCATGGGAG AAATGATCCA AGCGGCTAAC CAAGCCCCTG AAATTGCCTA CACGTTTAGC ACGTTCCGCG CGAATGTCCC TCACTACTAC GTTGATATCG ACCGTGAGAA AGCACAGCAG TTGGGTATTT CGCTATCGTC TATTTTCCAA ACCTTGCAAG GCAACTTAGG TTCGCTTTAT GTGAATGACT TCACCATATT TGGTAAGAAC TTCCGCGTAA CCATGCAAGC TGATAGCCAG CACCGTAGCA GCATGGAAGA TCTAGAGCGT TTCCATGTTC GTTCTTCGAA CGGTGATATG GTTCCGCTAA GTACGCTAGT GAGCTACGAG CAAGTGTTTG AGCCTGATGT GGCATGGCGT TACAACATGT ACCGCAGTGC TATCATTCAA GGCCAACCAG CTCCGGGCTA CTCTAGTGGT GATGCGATTG CCGCAATGGA ACGCGTTGCT GCAGAGGTCC TTCCGCAGGG CTACACGTAC GAATGGACAG GTATGGCCTA CCAGGAAGTA CTTGCGGGTA ACCAAGCCAT TTATGCGTTT GCACTGGCTT TGATCTTCAT TTACTTGTTC ATGGTGGCAC AATATGAGAG CTGGAGTATT CCATTAGCCA TCATTTTGGT GGTGCCAGTA GCAACGTTAG GCTCCTTCTT GGCGTTGAAT CTGACTGGGA CACCGCTTAA CTTGTATGCG CAAATTGGCC TTGTCTTGCT CATAGCCTTG GCGGCGAAAA ACGCAATTTT GATTGTGGAG TTCGCCAAGC AAGAACGTGA AGAAAAAGAT GCTGATATCG ATAGTGCAGC GGTTAAAGGA GGCACGTTAC GTTTCCGCGC TGTGAATATG ACATCTTGGT CGTTTATCCT GGGTATCTTC CCGCTGATCT TCGCCGCAGG TGCAGGGCAC GTGAGCCAAA ACTCGCTCGG CGTGTCGCTG ATTGGTGGTC TATTGTGTGT GCTTCTAGCA GGTACATTCT TGATCCCAGG CTTCTACGCT CTGGTGCAAA GACAGCGAGA GAAAGTTCAT GGCGGCAACA CCAAGCTGGT TCCTCTTGAT GATGAGTAA
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Protein sequence | MSSKSANDGS YSLNVTFDVG TDPDMAQVNV QNRVSQIESK LPQEVRMVGV TVKKRSPDLL MVLNFYSPDG KYDDQFLINY INLNVKDQLA RAKGISEVNV IGGGEYAMRV WLDPEKMANL KLTTSDVYAA LAEQNVQVAA GRVGAAPYNN PQEVQFNLVT KGRLESVSEF ENVVLRANPN GSTVYLKDVA RVELGKKFYD GNGKFRGQDA SIVALSLQSD ANALESGQAV MELLEDLSKN FPEGMAYETS YDTTVFVSES IKGVVKTLIE AILLVIAVTY LFLGSARATL IPVVAIPVSL IGTFAIMQAT GFTINTVTLF GLILAIGIVV DDAILVIENV DTTMAKDPTI SPRKATLLAM KEVTGPIITS TLVLLAVFIP VAMLPGITGI MYRQFALTIC ISVVISSINA LTLSPALCSL VLKQGGGNTA NWFQAFNRGL ERITTRYGQV AGFLVKKSLL LVTFFIVAIA AVTFFAKTTS TAFVPQEDKG ILLVNVQLPD SASLSRTEEV TNDLMNMIGE EPGVDGVTVA NGYSFMTGAA ASNGASVFIK LHDWDTRNSL QGEHSANAIA ARINGRAATE LPQAVVFAMG PPAVPGMGAA SGFEFVLEDT LGRSRTDLSM VMGEMIQAAN QAPEIAYTFS TFRANVPHYY VDIDREKAQQ LGISLSSIFQ TLQGNLGSLY VNDFTIFGKN FRVTMQADSQ HRSSMEDLER FHVRSSNGDM VPLSTLVSYE QVFEPDVAWR YNMYRSAIIQ GQPAPGYSSG DAIAAMERVA AEVLPQGYTY EWTGMAYQEV LAGNQAIYAF ALALIFIYLF MVAQYESWSI PLAIILVVPV ATLGSFLALN LTGTPLNLYA QIGLVLLIAL AAKNAILIVE FAKQEREEKD ADIDSAAVKG GTLRFRAVNM TSWSFILGIF PLIFAAGAGH VSQNSLGVSL IGGLLCVLLA GTFLIPGFYA LVQRQREKVH GGNTKLVPLD DE
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