| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000396 |
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| Symbol | |
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| ID | 8558702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | - |
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| Start bp | 449109 |
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| End bp | 450890 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646408062 |
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| Product | choline-glycine betaine transporter |
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| Protein accession | YP_003287549 |
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| Protein GI | 262395696 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATA AGCTTGGTGT GTTATACCTC GCACTGGGTA TCGCAGCAAT GTGTTTTATG
ATTTACACCG TGTTCAGCGA TCTTGGCCAA ATCAAACTTG GTGAAGCCGA CGAGCAACCA
GAATTTGGTA ACGCCTCATG GGCTGCAATG CTATTTTGTG GAGGTATTGG CGCAAGTATT
CTGTATTGGG GGTGTATCGA GTGGGCATAC TACTATCAAT CACCACCATT TCAGTTGGAA
GCAGGCAGTG AAGAAGCCAT TCGCTGGGCC GCGACTTATG GTCTGTTTCA CTGGGGACCG
ATCGCTTGGT CAATTTACCT TATTCCTGCT CTGCCTATCG CTTACTTCTT TTATGTACGC
AAACAACCTG TTTTGAAAAT CTCTAGTGCG TTAATGCCTG TATTAGGAGA AAAGCGTGCA
AACGGTGGTA TTGGCAAGTT TATTGATGTG CTGTTTATTT TTGGTATGTT GGGTGGCGCG
GCGACTACGC TTGGCTTAGC AGCGCCTCTT ATCAACGGTG GTCTACATCA TATCTTCGGT
CTTCCAAACA ATACCTTCAG CCAAGTGGCT GTATTACTTC TCTGTACTGC GATTTTTGGT
TACTCCGCGT ATGCAGGGCT TGAGAAGGGG ATCAAATTCC TTAGTAACAT TAACTTCTGG
GGTGCGATGG GCTTGTTACT CTTTGTACTC GCCGTTGGGC CAACCGTGTT CATGTTAGAA
ACAGGCTTAG ATTCTATTGG TCGTATGTTG TCTAACTTCT TTGTTATGGC TACCTGGGCG
GAGCCGTTTG GTGGTTATGG TGAGTTTACA GATACACACT TCCCGCAAGA CTGGACTATT
TTCTACTGGG CATGGTGGTT GGTCTTTGCT CCTTGTATGG GATTGTTTGT TGCGCGTATC
TCGCGTGGAA GAACGATCAA ACAGATGGTC GTAGGTTCTA TATTTTACGG TTCTTTAGGT
TGTTTCTTAT TCTTCATTGT TTTAGGTAAC TATGGTTTAT CGTTGCAATT GACGGGTGAG
CTTGATGTCA TCGCAATCCT CAACGAATCG GGCGCACCGG CGGCAATTTT TGCAACGTTA
GATACACTGC CGTTAGGGCC AATCGTTATT GGTGTTTTTA CACTGTTGTG TATCATTTTT
ACGGCGACGT CGTTTGACTC TATCTCGTAC ATTCTTGCGT CTGTGGTTCA AAATGATGTG
ACGGAAGAAC CGATGCGCTG GAACCGTTTG TTCTGGGCGT TTACTTTGTC TTTTCTGCCA
ACCGTCCTAA TGTTCATGGG AGGTTTATCG ACATTACAAA CCGCTGCGAT CGTGGGCGGT
TTACCGTTGT TAGTTATCTC GGTGATGTTG ATGGTGTCCT TTGTTCGCGC GGCGAGCCTA
GATATTAAAC ATCAAGCAGA ATACGAAGAG CCAACCATTA ACATTGAAGA ACTGCCGGAA
ATTGACCCTT GGTCAACAGA GGGAATGGCT TTGGCGAAAT TTGAGCGCTT TAAAGACTTA
GCTCAACAGG CGGCTGAAGA AGAGCGCGAA GCAATGGCGG CCCTGATGAG CATGCGTAAG
ATAATTCGCG CATTTGCCTT AGAGCACAGC TGTGAATCTG GGTTTTCGGA CCATCATTTA
CCAGAAGAGA TGCAAACAGA GCTACAGCAA CTAACCGAAG CGCTTGAGTT GGCTCAACAG
AAGAAGCAAG AACTGTCTGA ACAAGCCCAA GAATCTCGAA TGGAGTTTAA TCATGTGTTA
TTAGGCGGCG CGTCGGCAGG TTTAGCAGCG TCGCAGGCTT AA
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| Protein sequence | MTDKLGVLYL ALGIAAMCFM IYTVFSDLGQ IKLGEADEQP EFGNASWAAM LFCGGIGASI
LYWGCIEWAY YYQSPPFQLE AGSEEAIRWA ATYGLFHWGP IAWSIYLIPA LPIAYFFYVR
KQPVLKISSA LMPVLGEKRA NGGIGKFIDV LFIFGMLGGA ATTLGLAAPL INGGLHHIFG
LPNNTFSQVA VLLLCTAIFG YSAYAGLEKG IKFLSNINFW GAMGLLLFVL AVGPTVFMLE
TGLDSIGRML SNFFVMATWA EPFGGYGEFT DTHFPQDWTI FYWAWWLVFA PCMGLFVARI
SRGRTIKQMV VGSIFYGSLG CFLFFIVLGN YGLSLQLTGE LDVIAILNES GAPAAIFATL
DTLPLGPIVI GVFTLLCIIF TATSFDSISY ILASVVQNDV TEEPMRWNRL FWAFTLSFLP
TVLMFMGGLS TLQTAAIVGG LPLLVISVML MVSFVRAASL DIKHQAEYEE PTINIEELPE
IDPWSTEGMA LAKFERFKDL AQQAAEEERE AMAALMSMRK IIRAFALEHS CESGFSDHHL
PEEMQTELQQ LTEALELAQQ KKQELSEQAQ ESRMEFNHVL LGGASAGLAA SQA
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