| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000237 |
|---|
| Symbol | |
|---|
| ID | 8558542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 259716 |
|---|
| End bp | 260456 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646407902 |
|---|
| Product | transcriptional regulator AraC family |
|---|
| Protein accession | YP_003287390 |
|---|
| Protein GI | 262395537 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCATT TGAACTTAGA ATTTGATATT TTAAAACCTC AAAAGGCTTT AGCTGGCTAT
GTTCAAGCCA TTTGGTCAGC ATCCGTCAAA CCTGATACGA CGCAAACCGT ACGTAAACAA
TTACTCAGTG ATGCTGGTAC AGGTGTGGTA TTCATTTTAC AAAATGAAGT ACAAATGGAT
GGTGAATGGC AGGCGCCGGG GGTTGTCCTA CTACCTGTGA GCATTCTGGC ACATCAGGTC
TGCCTACCGC CAGGCGCGGT GATGACTGGC GTACGCTTTC ATCCTGCAGT CGGTTATCAA
CTATTTGGTA AACGTCTAGA ACAGTTATTG AGGATTCAAG ACGACCACCC TTTGGCTTCT
TCTGCGCTAG CAACATTTGA GTCTCTGCAA ACAGCGCGTT CGCCGTCTGC AAGGATTTCT
ACGTTATATC GCTGGGTTCA AACACTGATT GAGGAATATG AACCGCAGTA CGTCGGCCAC
ATTATTGACC AACCTACAGG GACCATCAGT CAGCGCCAGA GAGAGCGCAA TTTTCAGAAA
TGGTTGGGGA TTACTCCTAA ACATTACCAA CGCATTAAAC GAGTGAAGCA CACTTTAGAG
CAACTCCGAG CGCAACCCGA TCTTACTTTA TCGGAGTTGG CGCTGGAGCA AGGTTTTTCC
GATCAAGCAC ACATGACTAG AGAGTGTAAG CAGATTGCGC GCATGACACC GAAGCAGTTT
GTCCGAAAGA GAAATCTCTA A
|
|---|
| Protein sequence | MIHLNLEFDI LKPQKALAGY VQAIWSASVK PDTTQTVRKQ LLSDAGTGVV FILQNEVQMD
GEWQAPGVVL LPVSILAHQV CLPPGAVMTG VRFHPAVGYQ LFGKRLEQLL RIQDDHPLAS
SALATFESLQ TARSPSARIS TLYRWVQTLI EEYEPQYVGH IIDQPTGTIS QRQRERNFQK
WLGITPKHYQ RIKRVKHTLE QLRAQPDLTL SELALEQGFS DQAHMTRECK QIARMTPKQF
VRKRNL
|
|---|
| |