| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000051 |
|---|
| Symbol | |
|---|
| ID | 8558352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 56829 |
|---|
| End bp | 58535 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646407712 |
|---|
| Product | D-Lactate dehydrogenase |
|---|
| Protein accession | YP_003287204 |
|---|
| Protein GI | 262395351 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA AGCAGCTGAT TGACGAATTT AAAACTATCG TTGGGGAAGA AAATGTCCTA
ACCGACGAGG TTAAAACAAA ATACTACCGC TCAGGTTTTC GCTCAGGTAG TGGCACTGCG
CTTGCTATCG TGTTTCCTAA TACTCTTGTA GAACAATGGA AGATAATTAA ACAGTGCGTT
GAAGCAAACT GCATTATTAT TATGCAGGCT GCCAAAACAG GTTTAACAGA AGGCTCAGCT
CCAAGTGGTA ATGATTATGA CCGTGATGTG GTCGTGATCA ATATTACCAA AATCAAGAAG
ATTCACTTAT TAGATGGCGG TAAGCAGGCG GTATGCTTGC CAGGTGCAAG TTTGCACTCA
TTGGAAAAAG AATTGAAGGC GGTGAACCGA GCGCCGCACT CTATCATCGG TTCTTCATCA
TTAGGTGCCA CTGTGGTTGG TGGTATCGCC AATAACTCAG GCGGTGCGTT AGTCAAGCGT
GGTCCTGCTT ACACGGAACT GGCGATCTAT GCGCAGGTCG ATAAGCAAGG CCAGTTACAC
CTGGTTAATC ACCTTGGTAT TGAAGGTTTA GGTGAAACGC CAGAAGAAAT TCTGACAAAC
CTGCAAGAAG GAAACTTTGA CCCGGCGAAG ATCATTCATG ACGAGCGAAT GGCATCAGAC
AAAGAATACG ATGAACGTGT TCGAGACGTG ACTTCTGATA TTCCTTCTCG TTTTAATGCC
GATGAACGTC GATTATTTGA AGCCAGTGGC TGTGCTGGTA AGTTGGGTGT TTTTGCCGTT
CGAGTTGACA GCTACCCAGT ACCTGAAAAA GAGCAGGTTT TTTACCTTGG CACCAATGAC
CCTGCGAAAC TGACGAAGCT GCGAAAAGAT TTCTTATCTA CGTTTGAGAA CTTGCCTGAG
ATGGGAGAAT ACTTGCATCG AGATATCTTC AACATGGCAG AGAAGTACGG CAAAGATGTC
TTCTTATCCA TCGACTTATT AGGCACAGAT AAGCTGCCAA AAATGTTTGC ACTTAAAGCT
AAAGTAGAAA ATTTCTTAGA GCGCGTCCCG TTTGTTAGTA AATACCTGCC GGATACCATT
TTGTACTACG CGAGTAAGTT GTTCCCACAA CATTTACCAG AACGAATGCT GGATTTCCGT
GACAAGTATG AGCATCACCT GATATTGAAA ATGAGTGATG GTGGTATTGC TGAAGCGCAA
AAATACCTCA AAGAAGTTTG GGCTGTTGAA GACGACTGTG ATTTCTTCGA GTGTACGCCG
GAAGAGGGTA AAAAAGCTTA TTTACATCGC TTTGCAGCAG CAGGTGCAGC AATTCGTTAC
GAGACGATTC ACCGAAAAGA CGTAGAAGAC ATCGTTGCAC TTGATATCGC TTTGCGACGT
AATGATGAAG AGTGGTTAGA AACTTTACCA GAAGAGGTGA GTAAGAACCT TGTTCAAGCG
CTCTATTATG GCCACTTTAT GTGTTATGTA TTCCATCAAG ATTACATTTT CAAAAAAGGG
ACCGACACGA AGTTGATGAA AAAGCTGATG TTAGAACACC TCAATAGCCG TGGTGCTAAA
TACCCAGCAG AACATAATGT GGGTCACTTG TACGAAGCTG AAAATTCGCT GCAGAAGTTT
TACCACGAGC TAGATCCAAC CAACACCTTT AACCCTGGTA TTGGCAAAAT GGACAAATAT
AAGCGCAATT GTAACTGCTG TGCATAA
|
|---|
| Protein sequence | MKQKQLIDEF KTIVGEENVL TDEVKTKYYR SGFRSGSGTA LAIVFPNTLV EQWKIIKQCV
EANCIIIMQA AKTGLTEGSA PSGNDYDRDV VVINITKIKK IHLLDGGKQA VCLPGASLHS
LEKELKAVNR APHSIIGSSS LGATVVGGIA NNSGGALVKR GPAYTELAIY AQVDKQGQLH
LVNHLGIEGL GETPEEILTN LQEGNFDPAK IIHDERMASD KEYDERVRDV TSDIPSRFNA
DERRLFEASG CAGKLGVFAV RVDSYPVPEK EQVFYLGTND PAKLTKLRKD FLSTFENLPE
MGEYLHRDIF NMAEKYGKDV FLSIDLLGTD KLPKMFALKA KVENFLERVP FVSKYLPDTI
LYYASKLFPQ HLPERMLDFR DKYEHHLILK MSDGGIAEAQ KYLKEVWAVE DDCDFFECTP
EEGKKAYLHR FAAAGAAIRY ETIHRKDVED IVALDIALRR NDEEWLETLP EEVSKNLVQA
LYYGHFMCYV FHQDYIFKKG TDTKLMKKLM LEHLNSRGAK YPAEHNVGHL YEAENSLQKF
YHELDPTNTF NPGIGKMDKY KRNCNCCA
|
|---|
| |