| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000035 |
|---|
| Symbol | |
|---|
| ID | 8558334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 39689 |
|---|
| End bp | 40987 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646407694 |
|---|
| Product | TRAP-type C4-dicarboxylate transport system large permease component |
|---|
| Protein accession | YP_003287188 |
|---|
| Protein GI | 262395335 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00960897 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAAG TAGCTCTGTT AGCAGTGGCA GTTTTGGTCA TACTGCTGAC GTTCGGTGTG
CCTTTACCGT TCTGTTTCGG TGGTGCGTTA ATGGTAATGA GTTTTGTCGG CGATATGTCG
ATGAAAGGCA ATATGATGTG GGGCGCTGGC CAATTGATGA ACCCGGTTCT GCTTGCGATA
CCGCTGTTTG TCTTGGCTGG CACCATCATG AGTCGAAGTG GTATCGCCGC CAGTTTATTA
GGATTTGTGA ACGTTTTTGT CGGCCATATC CGCGGCGGAT TGGGCATCGT GGCCTCAGTT
AGCTGTGCAA TTATTGGTGC AATTTCAGGT AGTGGCTTGA CGGGTGTGGC TGCCATTGGG
CCTTTGCTTA TCCCTGAAAT GGAAAAGCGC GGTTACCCAC GAGCGTACGC AACAGCTTTG
ATTGCAAACT CATCAATTCT AGGTCTGTTG ATTCCGCCAA GTGTCACCAT GATTGTCTAT
GGTTGGGTCA CAGATACCTC TATTCTGGCC TGTTTTCTTG CGACTTTAGG TCCGGGTTTG
TTGGTCACTT TCAATTTTGC CGGAATCAAC ATGTTCATGG CGCGTAAGTT TCCACTGGTG
TTGGATGACA AACCAACGAT GTCCGAATTG ATAAAGCAGA CATCAAGCAA AACCTTTAAC
GCGATCCCTG CTTTATTGAT GCCTGTGATC ATTTTGGGTG GCATTTATGG CGGCATTATG
ACGCCAACAG AAGCTGCAGC CGTCGCAGTG ATCTACGCTG TGCCAGTTGG GTTCATGATC
TACAAAGGTC TTAGCTGGAA AACTCTGCTG GAATCCGGGA AAGAATCGGC AACCGCGGTT
GGCTCTATCA TGTTTATGAT TCTGTTTAGT CTCATCCTGA GCCAGATGTT CGTTGTTGAA
GACATTCCTC AGCAGCTTGT AGAAGCCATC TTTGGTATCA CCGATAACAA AGCGTTGCTG
CTTATTTTCA TTAACGTGTT GCTGTTTTTA GTGGGCATGG TGGTGAATGA CCTTACTGCC
ATTATCCTTA TCGCGCCGCT GCTTTTACCA CTGATGACAG CAATTGGTAT CAGTCCAATT
CAGTTTGCCG CCATTATGGG CGTAAACACG GCAATGGGTG GTGTAACCCC TCCATATGCG
TCGATTCTTT ACCTAGGTGC TCGCATCGGA AACGTTAAGT TCTCGGAAGT TGTTGGCCCT
GCAATGCTAC TGATTGTGTT TGGCTACCTG CCAGTCGTAA TCCTAACTTC GTTCTGGGCA
GATTTGTCTC TGTTCCTCCC TACTGTGTTT GGTTATTAA
|
|---|
| Protein sequence | MVEVALLAVA VLVILLTFGV PLPFCFGGAL MVMSFVGDMS MKGNMMWGAG QLMNPVLLAI
PLFVLAGTIM SRSGIAASLL GFVNVFVGHI RGGLGIVASV SCAIIGAISG SGLTGVAAIG
PLLIPEMEKR GYPRAYATAL IANSSILGLL IPPSVTMIVY GWVTDTSILA CFLATLGPGL
LVTFNFAGIN MFMARKFPLV LDDKPTMSEL IKQTSSKTFN AIPALLMPVI ILGGIYGGIM
TPTEAAAVAV IYAVPVGFMI YKGLSWKTLL ESGKESATAV GSIMFMILFS LILSQMFVVE
DIPQQLVEAI FGITDNKALL LIFINVLLFL VGMVVNDLTA IILIAPLLLP LMTAIGISPI
QFAAIMGVNT AMGGVTPPYA SILYLGARIG NVKFSEVVGP AMLLIVFGYL PVVILTSFWA
DLSLFLPTVF GY
|
|---|
| |