| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000016 |
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| Symbol | |
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| ID | 8558314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | + |
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| Start bp | 13497 |
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| End bp | 17015 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646407674 |
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| Product | IcmF-related protein |
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| Protein accession | YP_003287168 |
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| Protein GI | 262395315 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTATTA AAGAAATTGG CAGAATATTT ACTCAAAGGT GGTTTCTCGG TCTTATCGGT
GTCGCTGCTT GTTCAATTTT TATTTGGGTT GTTGGTCCAC TTATCACGAT AGCGGGATAT
GAGCCGCTAA AGAGCGACTT CCAACGACTC GTCACGATTT TGGTGCTGGT GTTTGTGTGG
GCTTTATTCA ACGTGACTAA GCAGCACAAG CAAAAAGTTA AAGAAGACGA AAGTATTCAA
ACGTTACTTG AGGTTGATAG TCAGTCAGAT AAAGAAGCGG CGAGTGAAAT TGACTTAATG
CGCGAGCGTA TTGAGCAAGC TGTCAAAGTA GTAACGAAAA CACATAAAGG AAAGCGAAGC
TTATATGACT TGCCTTGGTA TGTGTTGATC GGCCCTCCAG GGACAGGAAA AACAACAGTG
TTAAAGCAGT CAGGGCTGGA GTTTCCGTTA GCGGATAGCC TTGGTTCTGA CTCTATTGCT
GGTGTCGGTG GAACTCGTCA TTGTGATTGG TGGTTTGCAA ATAAAGCCGT TCTGATTGAT
ACGGCCGGTC GATACACGAC ACAAGACAGT CAAGAAAAGG TCGACTCTAA AGCATGGCAC
GGCTTCTTAG GGTTGTTGAA AAAATATAGA ACGCAAAGGC CAATTAATGG TGCAATTGTC
ACGATCAGTT TAGCCAGTGT GATGTCGCAG ACAAGAACCG AGCGAAGCCT TCATGCCCGA
GCTATCAAGT CGCGCCTTCA AGAACTGAAG AATCAGTTAG GGATGCAATT TCCTATTTAC
GTACTACTGA CCAAAATGGA TTTAGTTGCG GGTTTCAATG AGTTCTTCTC TGATCTAAGT
AAGGAAGAGC GTGAGGAATT GTTCGGTTTC ATGTTTCCGC GTGAAGTGGC TGATGAAAGA
GGGGTTATTT CTTTATTCAA TAAAGAATTT CATGGCATGT TGGAGCGCCT TGATGCGCGA
ATGCTGAGAA TCCTTGAAAC TGAAGATGAT TTAGAGAAGC GAGCACTTAT TTTTGAATTT
CCTAAACAGC TAAGGGTATT GCAAGCTAAC CTTGATGAAT TTTTAGCGGA AATATTTGCA
CAAAATAGTT TTGAAGAGCC AGCCTTGATT CGTGGTGTGT TTATGTTGAG CTCGGTCCAA
GAAGGCTTAC CAGTCGATAA GTTAATGAAT GAATCGACCA ATGGACTTGG ACTAAATCGC
CTCGCTCTAG CAAAAAGCCC AACAGGATCT CATAGTTATT TCGTGAAGAA CTTGTTTGAT
AAGGTTATTT TCAAGGAACA ACTGTTAGGA ACGGTTAATC GTCACTATCA AAAGCAGTCA
GGGTGGATGC GCCGAGGTGT TTACATTGGC TGTGCTTCTC TACTGCTAGG TGCGTCTGCA
CTTTGGCTTA TGAGCTACAA GTGGAATTCT CAGTTGATTG TCGATACCAA TGAGCAAGCC
GGCCATATTG AAGCAATGAT TGGTGCTGAG AGCTTAGATT TTGAGGCGGA TATTATCTCA
GCCGTAGAGA CATTAGACCG ATTGATGACG CTTCCTCTAG GAAAGCAAAG CAACTACGGC
GATGCTGATT CCGTAAAAAG GTTTGGTCTC TATCAAGGAG ATAAAGTCTC ACAGGCGGCG
AACAATGCAT ATTCTGATGC GTTGACCCAA TATTACGCTC CCTTGCTTCT TGATAGCTTG
GTGACGGAAA TGGAAAGTAA TCAACAGCAT CGAGAGTATT TGTATGAAAC GTTGAAAACT
TATTTGATGT TATTTAATCC AGACAAATAC CAACAAGATG AAGTGTTGGC TTGGTTTAAC
TTCTATTTTG AACGTCAATA TCCGGGTGAA CTAAATCTAG ACTTAAGAAA AGGTCTGTTA
CAGCACACTC AAAATTTATT AGAGAATAAT GGACAAGGCT TTTCTTATAA TACTGCTGCC
GTGACTAATG CTCGCGAGGT TTTGACACAA ATGTCTCTAC CAGAACGTGC TTATCAGCGA
ATGAAGATAC AATTTTCGAA GAGTCATGTT CCTTCATTTC GTTTGACTGA TGTCTTGGGG
CCTAAAGGGC TTGAGCAGTT TGAACGAGCG AGTGGAAAGC CGTTATCACA AGGCATTTCG
GGCTTTTATA CGTACAATGG CTTTCATAGC ATTTTTCAGA TTCAGATCAA CCGTACAGTA
AAAAGCCTAA TGGAAGAGAA CTGGGTTTAT GGTGACGATC TTAAGGCTCA TGAAATTGAT
CAAGATAGCG CTATTCAAGG AGTCCAATCT CGATACTATC AAGATTATGT GAATGAATGG
AAAACTCTGA TCGAAGATAT TCAACTTAAG CAGGCTCCGA GCCTAGAGCT TGCAACAGAA
CAAGCTAGAG TTCTATCTGG AGTTGAAAGA CCAATCGAAT CGTTGTTGAG GGCAATCCAA
AAAGAAGTTG GTTTGTCGAA AGTATCATTG TCAGAAAATC AGAAGGCCAC TTCTGAAGTC
GCTGGTAAGG TTGCCAAAGT TAAATTTTCG AATACGGCAG ATAGACTAGA CATGTACTTG
CCTGAAGAAA ATGGTTTCAA TGTTGCACTG CCAGGTAAAG AAGTCGAATC TCATTTTTCG
GAGATCTTAC GTCTCGGCGA ACAAGACTTT GATGATATTC AACAAGCTAT GGTTAACTTG
CGCTCGTATT TAAGCGATTT ATCAAGCTCA GGTAATAATC AGAAAATTGC TTACAAAAGT
ATTTTAGATG GGACCGTTAC ACAAGATGTA GCAGCTTCCT TTGCTCGCGC TAAAGAACTT
TTGCCTAGGC CATTTAATCA ATGGCTAGGT GAACTTTCTC AAGAGTCAGT TAAGTTTGCG
GAGAGCGGGT CGAAAGATCA TCTAAATCAG CTTTGGGTTA CGCAAGTGGT GCGCCCTTAT
CAGCGGACTA TTGCGGGTAG ATACCCATTC GAGCCAAATG CAAGCAGAGA AGTAAGGCTG
AAGGACTTCA AACGTTTCTT TGGTTATGGA GGTACGCTTG ACTCATTCTT CCAAGAGTAT
CTTGAACCGT TTGTCGATAC TTCGAAAAGT CGTTGGCGAT TAGAAAAGGA AATTGGAGTT
CGTCCAGAAA CGCTGATGGT CTTTCAAAGA GCGAAGCGTA TCAGGCAGTC TTTCTTTGAA
TCTGATAATT CATTGCGCGT AGAGTTCGGT ATGAAACCAG TGTATCTGGA TCAGCACATT
ACTCGGTTTG TTCTAGAGCT AGGTAAGCAA GATTTGGTTT ATAAGCATGG ACCAGCACGA
GCTAAATCCT TGAGCTGGCC TGCGGGTCAA GACCAGACTC GAATAGTGTT CACACCGCCA
GAATCTAAAC GTGAGATTGC CCATACTTAT GAAGGTGAGT GGGGCATATT CAAACTGCTA
GATCAATCAC TTAAAGCAAG ACCAGAATCA CGTAAAGACA ACATAGTTAT GATTGATTTA
AAGGGAAATA AGGTGCAACT AGAGCTTATT CCGTCTAGTG CTATTAATCC GTTTTGGTCA
AATGAAATGG AGAGGTTCAG ATGTCCGCGA ACCTTGTAA
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| Protein sequence | MRIKEIGRIF TQRWFLGLIG VAACSIFIWV VGPLITIAGY EPLKSDFQRL VTILVLVFVW
ALFNVTKQHK QKVKEDESIQ TLLEVDSQSD KEAASEIDLM RERIEQAVKV VTKTHKGKRS
LYDLPWYVLI GPPGTGKTTV LKQSGLEFPL ADSLGSDSIA GVGGTRHCDW WFANKAVLID
TAGRYTTQDS QEKVDSKAWH GFLGLLKKYR TQRPINGAIV TISLASVMSQ TRTERSLHAR
AIKSRLQELK NQLGMQFPIY VLLTKMDLVA GFNEFFSDLS KEEREELFGF MFPREVADER
GVISLFNKEF HGMLERLDAR MLRILETEDD LEKRALIFEF PKQLRVLQAN LDEFLAEIFA
QNSFEEPALI RGVFMLSSVQ EGLPVDKLMN ESTNGLGLNR LALAKSPTGS HSYFVKNLFD
KVIFKEQLLG TVNRHYQKQS GWMRRGVYIG CASLLLGASA LWLMSYKWNS QLIVDTNEQA
GHIEAMIGAE SLDFEADIIS AVETLDRLMT LPLGKQSNYG DADSVKRFGL YQGDKVSQAA
NNAYSDALTQ YYAPLLLDSL VTEMESNQQH REYLYETLKT YLMLFNPDKY QQDEVLAWFN
FYFERQYPGE LNLDLRKGLL QHTQNLLENN GQGFSYNTAA VTNAREVLTQ MSLPERAYQR
MKIQFSKSHV PSFRLTDVLG PKGLEQFERA SGKPLSQGIS GFYTYNGFHS IFQIQINRTV
KSLMEENWVY GDDLKAHEID QDSAIQGVQS RYYQDYVNEW KTLIEDIQLK QAPSLELATE
QARVLSGVER PIESLLRAIQ KEVGLSKVSL SENQKATSEV AGKVAKVKFS NTADRLDMYL
PEENGFNVAL PGKEVESHFS EILRLGEQDF DDIQQAMVNL RSYLSDLSSS GNNQKIAYKS
ILDGTVTQDV AASFARAKEL LPRPFNQWLG ELSQESVKFA ESGSKDHLNQ LWVTQVVRPY
QRTIAGRYPF EPNASREVRL KDFKRFFGYG GTLDSFFQEY LEPFVDTSKS RWRLEKEIGV
RPETLMVFQR AKRIRQSFFE SDNSLRVEFG MKPVYLDQHI TRFVLELGKQ DLVYKHGPAR
AKSLSWPAGQ DQTRIVFTPP ESKREIAHTY EGEWGIFKLL DQSLKARPES RKDNIVMIDL
KGNKVQLELI PSSAINPFWS NEMERFRCPR TL
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