Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_004522 |
Symbol | |
ID | 8558290 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 3247161 |
End bp | 3248489 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646407651 |
Product | type I secretion TolC precursor |
Protein accession | YP_003287145 |
Protein GI | 262395291 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000301167 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT TGCTTCCACT ATTTATCAGT GCAGCGCTAG GTAGCATGAG TACGTCTGCG TTCGCAGACT CTTTGGCTGA AATCTACGAC TTAGCAAAAC AAAATGATCC ACAATTGCTC AGTGTAGCAG CACAACGTGA CCAAGCTTTC GAAGCAATCA CCTCAAGCCG TAGTGCTCTA TTACCACAAA TTAACCTAAC AGCAGGTTAC AACTTAACTC GTGGCGATAC TGAATACGAC TCAAATCTAG TCAATGACGT ATCAAACGAT GCCAACGCTC TAACCGCTGG TGTTAGCTTT TCACAAGCAC TTTACAACCG CGCATCTTGG ATCTCGCTAG ATACCGCTGA GAAAAGTGCT CGTCAAGCAG ACGCAACTTA CGCTGCGACT CAACAAGCAC TAATTCTTCG TGTTTCACAA GCGTATTTTG AAGTTCTACG CGCACAAGAC AACCTTGTTT TCGTCCGTGC AGAAAAAGCC GCAGTGGGTC GTCAACTAGA GCAAACAAAA CAGCGTTTTG AAGTAGGTTT ATCTGCGATC ACTGACGTAC ACGACGCGCA AGCTCAGTAC GACCAAGTAC TGGCGGATGA AGTGTTAGCA GAAAACGCAC TGACTAACAG CTACGAGTCA TTACGTGAAA TTACCGGTCA AGAACACAAA GATCTCAACA TCTTGGACAC TCGCCGCTTC ACTGCTAGCC CATCGACCGT GCCTGCTGAA TCACTAATTG ACGAAGCAAA AACCAAAAAC CTGACCTTGC TATCTTCACG TATTCTTCAA GATATCGCAC GTGACAATAT TTCACTAGCA AGTTCTGGTC ATCTACCAAC GCTGTCTCTA GACGGTGGTT ACAACTACGG TGATACGTCT CATAGCTCTC GTGACAACAC CACAGACAAC TTCAATATCG GTGTGAACCT TGCGGTGCCG CTATACACGG GTGGTAACGT CACCTCTCAA ACCAAACAGG CTGAATACGC GTACGTGGCA GCAAGTGAAG ATCTTGAAGC ACAATACCGT AGCGTAGTAA AAGATGTTCG CGCACAAAAC AACAACATTA ACGCCTCTAT CGGCGCACTA CGTGCTTATG AGCAAGCCGT TATTTCTGCG CGCTCTGCAC TAGAAGCAAC AGAAGCAGGT TTTGATGTGG GTACTCGTAC TATCGTTGAC GTGCTAGACG CAACTCGTCG TCTATACGAT GCGAATAAAA ACCTATCGAA CGCTCGTTAC GACTACATCT TAAGTGTTCT TCAGCTACGC CAAGCCGTTG GTACGCTAAG CGAACAAGAC ATCTTAGACG TTGATGCAGG TTTGAAAGCA GCAAAATAA
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Protein sequence | MKKLLPLFIS AALGSMSTSA FADSLAEIYD LAKQNDPQLL SVAAQRDQAF EAITSSRSAL LPQINLTAGY NLTRGDTEYD SNLVNDVSND ANALTAGVSF SQALYNRASW ISLDTAEKSA RQADATYAAT QQALILRVSQ AYFEVLRAQD NLVFVRAEKA AVGRQLEQTK QRFEVGLSAI TDVHDAQAQY DQVLADEVLA ENALTNSYES LREITGQEHK DLNILDTRRF TASPSTVPAE SLIDEAKTKN LTLLSSRILQ DIARDNISLA SSGHLPTLSL DGGYNYGDTS HSSRDNTTDN FNIGVNLAVP LYTGGNVTSQ TKQAEYAYVA ASEDLEAQYR SVVKDVRAQN NNINASIGAL RAYEQAVISA RSALEATEAG FDVGTRTIVD VLDATRRLYD ANKNLSNARY DYILSVLQLR QAVGTLSEQD ILDVDAGLKA AK
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