| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004394 |
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| Symbol | |
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| ID | 8558162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 3098491 |
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| End bp | 3099468 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 646407523 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_003287017 |
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| Protein GI | 262395163 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.530574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCAGC AGATTGTATT AACAAATACC GTAAAAGATA GCCAGTTAGG TCAACGTTTA
GACCAAGCTA TCGCCGAATT ATTCGCGGAC TTCTCTCGCT CGCGCCTGAA AGAGTGGCTG
CTTGATGGGA AAGTTCAAGT TAATGGTGAA GTTGTCACCA AACCTCGCAC CAAAGTAATG
GGTGGCGAGG AAATTACATT GCAAGCCGAG TTAGAAGATG AAGAACGCTG GGAAGCGCAA
GATATCCCGC TAGATATCGT TTTTGAAGAT GACGATATTA TCGTTATCAA TAAGCCTCGT
GACTTTGTGG TTCACCCAGG TGCCGGTACG CCAGATGGTA CGGTGCTTAA TGCGTTGTTG
CATCATTACC CTGATATCGC AGAAGTGCCT CGTGCTGGCA TTGTGCACCG CCTGGATAAA
GACACAACGG GTCTGATGGT GGTGGCGAAA ACCGTTCCTG CACAAACTCG TCTGGTTCGC
GCACTGCAAA AACGTAATAT TACTCGAGAG TACGAAGCGA TCGCTATTGG TCGTATGACA
GCGGGCGGTA AAGTGGACCA ACCTATTGGT CGTCATTCTA CCAAGCGCAC GCTTATGGCG
GTAGCACCAA TGGGTAAACC AGCGGTAACA CATTACCGTG TCGCTGAACG TTTCCGCGAA
CACACACGTA TCCGTCTGCG TCTTGAAACG GGTCGTACGC ACCAGATCCG TGTGCACATG
TCTTACCTTC AGCATCCGCT GCTCGGTGAT ATTGCATATG GTGGACGTGC TCGCATCCCG
ACAGGTGCTT CTGAAGAGCT AACGGCAATG ATCCGTGGCT TCGATCGCCA AGCATTGCAC
GCCGTAATGC TACGCTTTGA ACATCCAATT ACGGGAGAAG TACTTGAGTT CCATGCCCCT
GTGCCTGATG ACATGGTGGC GATGACTGAA GCGCTTCGTC AAGATACGGA AGAGCACGGT
TTACCGGAAG AGTTCTAA
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| Protein sequence | MAQQIVLTNT VKDSQLGQRL DQAIAELFAD FSRSRLKEWL LDGKVQVNGE VVTKPRTKVM
GGEEITLQAE LEDEERWEAQ DIPLDIVFED DDIIVINKPR DFVVHPGAGT PDGTVLNALL
HHYPDIAEVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVR ALQKRNITRE YEAIAIGRMT
AGGKVDQPIG RHSTKRTLMA VAPMGKPAVT HYRVAERFRE HTRIRLRLET GRTHQIRVHM
SYLQHPLLGD IAYGGRARIP TGASEELTAM IRGFDRQALH AVMLRFEHPI TGEVLEFHAP
VPDDMVAMTE ALRQDTEEHG LPEEF
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