Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_004277 |
Symbol | |
ID | 8558038 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 2956658 |
End bp | 2958850 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 646407399 |
Product | TonB-dependent heme receptor |
Protein accession | YP_003286900 |
Protein GI | 262395046 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein [TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACGAT TAAAAAGTCA TCCATTCAAA GTAAATCTCA TTTCACTAAC TTTGCTCTTC CCTCTTTATT CATATGCCGA GACAACGCCA AATGAAGAGC TCGAAGTCAT CGGTGTGCGT TATGCCAAAC CCATCACCGT TGCTGAGCCT GCGCAAACCA CCATTAATTG GTCAGAGATT GAAGAGCAAC AGTACTCCAA TTTTGCCTCA ATGATCGATG CCGTTCCGGG CGCATCATTA GATGGCGGCG GCCGTTCCGG CGGCGAACGT ATTAATATTC GTGGTTTTGA TGATCCAAGC GATATCGCCG TATTTGTCGA TGGCGCTCCA ATTGGCTTTC AACAATACCG CTACGGAACT TTCTTTTTTG ATCCGTTCTT GATTGGTGAA GCAGAAATTA TCAAGGGCGC GCACGACTAT CGAGCACTCA ACGGAAAGTT TGGTGGCTCA ATTCGTATTA AAACCAAAAG TGTCGATGAC CTACTGTACG GCAACAGAAA CTTTGGTGCT CGCATCTCAA GTGCATATAA CACCAACGGC GATGAGAATG CCTACACGCT AACACTCTAT GGTAAAAACG ATGCTGGTTT TTATTTTCTA GCGAATGGCT CTGTAAAAGA TTCTGATGAC ATTAAAGTCG GTGGTGGTGA AACGCTGGAT TACTCAGGTT ATGAGCAAGA AAACATGCTC GTAAAAGTCG GTTATGAAAA CAACGATCAC GAGTTTGAAA TTAGCCACAC TCGCTATAAA GATGAAGGTC GTAAACCTTG GGCTAACCGC CGCGGAAAAA TGCCTAACAT TACTGAGTAC AACATCAAGA AATACGGATC ATTAGAAAAA GCCAAATACG CATACACCGT CGATAATAAA TACACGGATA ACACCACGAC CATCTCTTAC CACTATATGC CGACTAACCC GTATATTGAT TTCAATATCA AAATGGCACG TTCTGAAAAC GATCGTCACT GGGTTCGCCC TGACGTGGCA TTCGAGAAAA TGTTCGTTTC TGTTGGCAGT TACGGTCACG AGTCTTGGCT GAGTTACGAG CGTGACTATG CTGATGTGTT TAACCAAGCG CAGTTCGGAG AACACACTCT AGTCACAGGG CTTCAATATC AAAAAACAGA TAGAGATTCA TTAGTATTCA ACGCATCATA CGACAGTAAT GAAGCCAAAA ACTACGGTTG GTATACCCCT TACTACGAAC CATCTGGCAC TCAGTCAATT TATGCCGCTT ACATTGCTGA TCACTATCAA GCAACAGACC GCCTAACAAT CACACCTTCT CTGCGTTACG AATACATCAA GAGTGAAGGA AAAGGGAACA CTGCGCCGGA TTATAATGAT CCAGCTGCCG GACATGACTA CGGTGAAACG ACGCATAAAG GCTTTAGCCC ACGTTTGGAT ATCGACTTTG ATGCGAGCAA TAATACGCGT TTAAACGCCT CCTACGCCTA CGCTTTAAAA GCACCAACCG TTGATAACAT CTACTCAGTG CAATATGCGC GAGCTACCGC TACGGCTACT GCTTTGAATC TGGACGTGTC TCGTATCCAT GCTTATCAAG CAAGCGTTAT CAACTTAACG GAAGGGCTGG TGAACTCTCG CGATAACCTC GCAACAGAGT TAACTTTGTT CTATAACGAT GTTAGCGACA CAGTTGATAT ACGAACGGGC GAAAACCTCG ACAAAAATAC TACTGAGTTA CAAAGCTGGA ATACAAACCT AGATGGCTTT AAAAACTACG GCTTTGAGCT AATTTCACAA TACCGGATTG AAGATTTCTA CAGTAATTTC TCAGCAAGTT ACATTCGCGG CAAAAACAAA GGCAGTTTAT CTGACTCTAC AGGTTCAGAT GATGATCATC CTGATGTACC GCCATTAAAC ATTAATCTGG GTTTAGGTTA CGAATGGATT CCTGGTTTAC GTACGGGCTG GGAAGTCCGT TGGTATGATG CGCAAACCAA AACCAAAACC AAGGCAAGCG GTAACAATTT AAAAGTGAAA TCGCCAAGTG AGCAATACAC GCTACAAAAC GCTTACGTGG TTTGGGAAAT ACAACAAGTC GAAGGCTTGA GCGTTGGCGC GGTTGTGAAA AACTTAACCG ATCGTTACTA CGAAGCATAC CTATCTAATG GCGTGCCTTC GCCTGGTCGC GAAGTCAAAC TGCACCTCAC TTATCAATAC TAA
|
Protein sequence | MKRLKSHPFK VNLISLTLLF PLYSYAETTP NEELEVIGVR YAKPITVAEP AQTTINWSEI EEQQYSNFAS MIDAVPGASL DGGGRSGGER INIRGFDDPS DIAVFVDGAP IGFQQYRYGT FFFDPFLIGE AEIIKGAHDY RALNGKFGGS IRIKTKSVDD LLYGNRNFGA RISSAYNTNG DENAYTLTLY GKNDAGFYFL ANGSVKDSDD IKVGGGETLD YSGYEQENML VKVGYENNDH EFEISHTRYK DEGRKPWANR RGKMPNITEY NIKKYGSLEK AKYAYTVDNK YTDNTTTISY HYMPTNPYID FNIKMARSEN DRHWVRPDVA FEKMFVSVGS YGHESWLSYE RDYADVFNQA QFGEHTLVTG LQYQKTDRDS LVFNASYDSN EAKNYGWYTP YYEPSGTQSI YAAYIADHYQ ATDRLTITPS LRYEYIKSEG KGNTAPDYND PAAGHDYGET THKGFSPRLD IDFDASNNTR LNASYAYALK APTVDNIYSV QYARATATAT ALNLDVSRIH AYQASVINLT EGLVNSRDNL ATELTLFYND VSDTVDIRTG ENLDKNTTEL QSWNTNLDGF KNYGFELISQ YRIEDFYSNF SASYIRGKNK GSLSDSTGSD DDHPDVPPLN INLGLGYEWI PGLRTGWEVR WYDAQTKTKT KASGNNLKVK SPSEQYTLQN AYVVWEIQQV EGLSVGAVVK NLTDRYYEAY LSNGVPSPGR EVKLHLTYQY
|
| |