| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004152 |
|---|
| Symbol | |
|---|
| ID | 8557891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2820665 |
|---|
| End bp | 2822074 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646407252 |
|---|
| Product | N-acetylglucosamine-regulated outer membrane porin |
|---|
| Protein accession | YP_003286775 |
|---|
| Protein GI | 262394921 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.569888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAT TTTTTAAGGT TTCAGCGTTA ACCGCAGCAA TGTTTGGTGT TGTTGCTGTT
GCTCCAGCTA CAGCGTCTAC TGAAAGTGCA GCAGGTGGCG AGTACGTAGA GAAAGTGAAC
GAATTTATGC AAGACTCTAG TCTTAATGCA TTATTTCTAG TTGATACTCG TTCTCGTACT
CGTACAACAG GTAAGCCAGG CGGTGAAAAC GGTGACCGTT GGAGTCGTCT AAACTACTCT
TCTTACAACG CAATTTTAGA CTTTACTTCT GGCTACCACG ATGGTTGGGT TGGTGCAGAT
GTTGCGGCTT ACTATTCTGG CGACCTTTAC AACGATAGCC TTTACAATTC AAACGAAGGC
TACCTATGTA ACGAAATTTC AACTTGTAAC AACCTAGACT GGGGTGCAGG TGATGGTCAA
CAGCTTAAAG TTTACAAAGC AGCACTGAAG TTCAAAGCAA ACGAAAGCTT CAACGCGCGC
TTTGGTATGC TACAAGCGGG TGGTAACGGT ACTATTGGTA ACGTTTGGAG TTTCGTACCT
GGTACTTACC GTGGTTTCGA ATTGAACGCT AAATTAGGTG ATTTCAACCT AAGCTACTTT
GGTGCAGACC AATTTACAGC ACCTTGGCTA CTTCACGAAG ATGACTACGC GCCAGCGCTT
TGGTCTGATA CTTCATGGAG CTACCTACAC TCTCTAGGCC TAAACGGTAA CCTAACTGAC
AGCTTGTTTA TGCAACTTGG TTTGGGTCAA GCTACTGGCG TTCAATATGC AAATGGTATC
GACTGGGGTG CAGGTCAAGT AACTAGCTAC CACAACGAAA CGGACAACAC TTCTTACAAG
GCTTACTTGA AGTACACTGT GAGTGACCGT ACAACTCTAG CATTTGATTT CTACGGTGTT
GACGATGATG TGAAATACGA TGGTCTAGGT TTCCACACTG GTCTATCTTT GAATCAATCT
TTCGGCAAGC TAGCTTGGAT GTCTGAGCTA CGCTACACAG ACACAGACAA CCGTGCTGAC
TTCGTTCCAC GTACAATTCA TACTTACGGT ATGAACAACG GTACTTGGTC TCAGTGGTGG
GATGCACTGT CTGACTGGAA CAAAGCGGGT GAGCTAGCGT GGTACAACCG TCTATCTTAC
AACCAAGGTA ACGGCTGGAA CTACTACCTA GGCTTTGGTT ACGGTACTGG AGCTGATTCT
GCAGCAAGCG GTGCATCAGG TGACTGGGAT TACGAAAGTG AATACGCAGT TAACGCGACA
GTATCTTACT CTCTACAGAG TGGCGCACTG AAAGGTTCTA CGATCCGTCT ACACGGTACA
ATCCTAGAGC GCGATGAGTA CGCTGGTGCT GGTGATGCGG ATGAAACGGA CCTACGTCTA
CAAGTTCTTA TCCCTTACAG CTTCCACTAA
|
|---|
| Protein sequence | MDKFFKVSAL TAAMFGVVAV APATASTESA AGGEYVEKVN EFMQDSSLNA LFLVDTRSRT
RTTGKPGGEN GDRWSRLNYS SYNAILDFTS GYHDGWVGAD VAAYYSGDLY NDSLYNSNEG
YLCNEISTCN NLDWGAGDGQ QLKVYKAALK FKANESFNAR FGMLQAGGNG TIGNVWSFVP
GTYRGFELNA KLGDFNLSYF GADQFTAPWL LHEDDYAPAL WSDTSWSYLH SLGLNGNLTD
SLFMQLGLGQ ATGVQYANGI DWGAGQVTSY HNETDNTSYK AYLKYTVSDR TTLAFDFYGV
DDDVKYDGLG FHTGLSLNQS FGKLAWMSEL RYTDTDNRAD FVPRTIHTYG MNNGTWSQWW
DALSDWNKAG ELAWYNRLSY NQGNGWNYYL GFGYGTGADS AASGASGDWD YESEYAVNAT
VSYSLQSGAL KGSTIRLHGT ILERDEYAGA GDADETDLRL QVLIPYSFH
|
|---|
| |