| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004021 |
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| Symbol | |
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| ID | 8557757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2672450 |
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| End bp | 2675563 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646407119 |
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| Product | RND multidrug efflux transporter |
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| Protein accession | YP_003286646 |
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| Protein GI | 262394792 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0276647 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTACTTT CTGACGTTTC TGTAAAACGC CCAGTCGCAG CGCTGGTATT GAGTATGCTG
CTGTGTGTAT TTGGTTTTGT ATCCTTTACG AAACTAGCGG TGCGAGAAAT GCCGGACATT
GAAAGTCCGG TCGTTTCCAT TAGTACGCGT TACGAGGGCG CTTCCGCGAC GATCATCGAG
AGTCAAATTA CTTCTGTATT AGAAGATCAG CTTTCAGGCA TCAGCGGAAT AGATGAGATC
AGTTCGACGA CGCGAAACAG CAGTTCGCGT ATCACGATCA CTTTTGAGCT AGGTTACGAT
CTCAATACGG GTGTTAGTGA TGTTCGCGAC GCGGTGGCTC GCGCTCAACG TTCGCTACCT
GATGAGGCGG ACGATCCAAT TGTCTACAAG AATAACGGTT CAGGTCAGGC CTCCCTCTAT
ATAAATCTCA GTTCTGCAGA GATGGACCGC ACTCAATTGA CGGATTATGC AGAACGTGTA
TTGATGGATC GCTTTAGCTT GATCTCTGGG GTGAGCTCCA TTGATCTCTC TGGTGGTTTG
TACAAGGTGA TGTACGTGAA GCTTAAGCCA GAGCTGATGG CGGGGCGCTC AGTCACGGCT
TCGGACATTA CATCGGCACT GCGAAGTGAA AACTTAGAAA GTCCGGGTGG TGAAGTTCGC
AATGACTCGA CAGTCATGTC GGTACGGACA GCGCGTAGCT ATAACACGCC GGAAGATTTT
CAGTACCTCG TGATTAAAAG GGCGAGCGAC AACACGCCTA TCTATTTGAA AGATGTCGCT
GATGTTTTTA TCGGTGCAGA AAACGAAAAC TCGACCTTTA AAAGCGATGG CGTCGTCAAT
GTTAGTTTGG GGGTTGTTCC TCAGTCTGAT GCGAACCCGT TAGAAGTAGC AAAATTAGTT
CGAGCTGAAG TTGATAACAT CCAGAAGTTC TTGCCGGAAG GGACGCGGCT TGCTATCGAC
TACGATGCGA CGGTGTTTAT CGAGCGCTCG ATAGAAGAGG TATATAGCAC GCTATTTATT
ACGGGTGGTT TGGTTATTTT GGTGTTGTAC ATCTTCATTG GTCAAGCTCG TGCAACCTTG
ATCCCAGCTG TTACGGTTCC GGTATCGCTG ATTTCTTCGT TCATTGCCGC TTATTACTTT
GGCTTTTCTA TCAACTTAAT CACCTTGATG GCGCTGATCC TGTCTATCGG CTTGGTAGTG
GATGACGCGA TTGTGGTTGT TGAAAACATC TTCCACCATA TCGAACGTGG TGAATCGCCT
TTGCTTGCGG CCTATAAAGG TACGCGGGAA GTAGGCTTTG CCGTTATCGC GACAACGCTA
GTGCTGGTGA TGGTATTCCT GCCGATTTCT TTTATGGATG GCATGGTAGG TCTGCTATTT
ACTGAGTTTT CTGTCTTGTT GGCGATGTCT GTGATTTTCT CGTCTTTGAT CGCCCTAACA
TTAACTCCTG TATTGGGTAG TCAGATTTTG AAGGCGAATG TAAAACCAAA TCGATTTAAT
CAAGTGGTCG ATCGCCTATT TAGTAAACTG GAGAGTGGTT ACCGCTCATT ATTGAAAGGC
GCATTGAAAA TACGTTGGGC TGCACCGCTG GTGATTCTGG CGTGTTTGGG CGGCAGTTAC
TTCTTGATGA ACCAAGTGCC AGCCCAGTTG ACCCCTCAAG AAGATCGCGG CGTGATGTTT
GCGTTTGTTC GCGGGGCTGA TGCCACGTCA TACAATCGTA TGTCAGCCAA TATGGACATT
GTTGAAGACC GATTGATGCC ATTACTCGGG CAAGGGTATC TGAAGTCGTT TAGTATCCAA
ACGCCTGCAT TTGGTGGACA GGCAGGCGAC CAAACCGGCT TTGTTATCAT GATTCTAGAA
GACTGGAACG AGCGAGATGT AACAGCTCAG GAAGCGCTTA ACAAAGTGCG TGGTGCACTG
GCTGGCATAC CTGATGTTCG AGTGTTCCCA TTCATGCCTG GTTTCCAAGG TGGTTCGAGT
GAGCCTGTTC AGTTTGTATT AGGTGGCTCT GATTACGATG AACTTCTCGT CTGGGCTGAA
ATGTTGAAAA ACAAAGCAGA AGAATCGCCA ATGATGGAAG GTGCTGAGAT CGATTACTCA
GAGAAAACGC CAGAGCTATT GGTTACGGTC GACAGACAGC GTGCCGCAGA ACTAGGGGTC
AGTGTCAAAG ACATTTCTGA TACGCTAGAA ATCATGCTTG GTGGTAAAAG TGAAACGACT
TATGTTGAGC GTGGCGAAGA GTATGATGTG TATCTTCGTG GTGATGAAAA CAGCTTTAAT
AATGCTGCGG ATTTAAGCCA GATTTATCTG CGAACCAATA GTGGGCAGTT AGTGACGTTA
GACGCGGTCA CTAAAATTGA AGAAGTGGCA GCTTCTATTC GTCTATCTCA CTACAACAAA
CAGAAATCCA TCACTATTAC AGCCAACTTG TCAGAAGGCT ACACATTAGG AGACGCGCTG
AATTACCTTG ATCAACAAGC GATAGACAAC TTACCAGGTG ACATCTCGGT GAGTTATTCT
GGCGAGTCAA AAGACTTTAA AGAGAACCAA GCGAGTGTTG CTGTCGTGTT TGCGTTGGCA
TTGCTTGTGG CGTATCTCGT GTTGGCGGCT CAGTTTGAAA GCTTCGTGAA CCCGTTAGTG
GTGATGTTTA CGGTACCGAT GGGCGTATTT GGTGGCTTCC TTGGCTTGGT TGTGATGGGG
CAAGGCATGA ACATTTACAG CCAGATCGGC ATGATCATGT TGATCGGCAT GGTGACGAAA
AACGGCATTT TGATTGTCGA ATTTGCCAAC CAGTTACGTG ACCGTGGTGT TGAATTCGAA
AAAGCGGTTA TTGATGCAGC TGCGCGACGT CTACGCCCGA TCTTGATGAC AGCATTTACC
ACGCTTGCTG GTGCCATCCC GTTGATTGTA TCGACAGGGG CTGGTTATGA GAGCCGTATT
GCCGTGGGTA CCGTGATCTT TTTCGGGATG GGATTTGCGA CATTGGTGAC CTTATTTGTC
ATCCCGGCTA TGTACCGATT GATTTCGGCG AAAACACAGG CGCCAGGTCA TGTAGAAGCA
GAATTGAACA AAGCACTCAG CCACGATACA AAAGGCCGTA TTGCTCATCC TTAG
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| Protein sequence | MLLSDVSVKR PVAALVLSML LCVFGFVSFT KLAVREMPDI ESPVVSISTR YEGASATIIE
SQITSVLEDQ LSGISGIDEI SSTTRNSSSR ITITFELGYD LNTGVSDVRD AVARAQRSLP
DEADDPIVYK NNGSGQASLY INLSSAEMDR TQLTDYAERV LMDRFSLISG VSSIDLSGGL
YKVMYVKLKP ELMAGRSVTA SDITSALRSE NLESPGGEVR NDSTVMSVRT ARSYNTPEDF
QYLVIKRASD NTPIYLKDVA DVFIGAENEN STFKSDGVVN VSLGVVPQSD ANPLEVAKLV
RAEVDNIQKF LPEGTRLAID YDATVFIERS IEEVYSTLFI TGGLVILVLY IFIGQARATL
IPAVTVPVSL ISSFIAAYYF GFSINLITLM ALILSIGLVV DDAIVVVENI FHHIERGESP
LLAAYKGTRE VGFAVIATTL VLVMVFLPIS FMDGMVGLLF TEFSVLLAMS VIFSSLIALT
LTPVLGSQIL KANVKPNRFN QVVDRLFSKL ESGYRSLLKG ALKIRWAAPL VILACLGGSY
FLMNQVPAQL TPQEDRGVMF AFVRGADATS YNRMSANMDI VEDRLMPLLG QGYLKSFSIQ
TPAFGGQAGD QTGFVIMILE DWNERDVTAQ EALNKVRGAL AGIPDVRVFP FMPGFQGGSS
EPVQFVLGGS DYDELLVWAE MLKNKAEESP MMEGAEIDYS EKTPELLVTV DRQRAAELGV
SVKDISDTLE IMLGGKSETT YVERGEEYDV YLRGDENSFN NAADLSQIYL RTNSGQLVTL
DAVTKIEEVA ASIRLSHYNK QKSITITANL SEGYTLGDAL NYLDQQAIDN LPGDISVSYS
GESKDFKENQ ASVAVVFALA LLVAYLVLAA QFESFVNPLV VMFTVPMGVF GGFLGLVVMG
QGMNIYSQIG MIMLIGMVTK NGILIVEFAN QLRDRGVEFE KAVIDAAARR LRPILMTAFT
TLAGAIPLIV STGAGYESRI AVGTVIFFGM GFATLVTLFV IPAMYRLISA KTQAPGHVEA
ELNKALSHDT KGRIAHP
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