| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003929 |
|---|
| Symbol | |
|---|
| ID | 8557665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 2564140 |
|---|
| End bp | 2565111 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646407027 |
|---|
| Product | tRNA (5-methoxyuridine) 34 synthase |
|---|
| Protein accession | YP_003286554 |
|---|
| Protein GI | 262394700 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2227] 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase |
|---|
| TIGRFAM ID | [TIGR00452] methyltransferase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00210133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAACT TTGCAAACTT CTACCAATTG ATTGCCCAAG ACACACGTCT TCAACCTTGG
CTCAATGTGC TACCACAACA GCTAACGGAT TGGCAAAATG CAGAGCACGG TGACTTTGGT
CGCTGGTTGA AAGCACTGAA CAAGATTCCA GAAGGCTCAC CGGATCAAAT TGACATCAAG
AATTCAGTGA CCATCAGCAA CGACACTCCT TTCCATGAAG GTGAGCTGAA GAAATTAGAG
AACTTACTTC GTACATTCCA TCCGTGGCGC AAAGGGCCAT ACCACGTACA CGGCATTCAT
ATTGATACTG AGTGGCGCAG TGATTGGAAA TGGGACCGCG TGCTTCCGCA TATTTCTCCA
TTAAAGAACC GCAGCGTACT CGATGTTGGT TGTGGTAACG GCTACCACAT GTGGCGCATG
CTGGGTGAAG GTGCACGCTT AACCGTCGGT ATCGATCCAT CTCACCTGTT CCTAATTCAG
TTCGAAGCAA TTCGTAAACT AATGGGAGAT GACCAACGTG CGCACCTACT GCCGTTGGGT
ATTGAACAAC TACCTAAGTT AGAAGCGTTC GACACGGTAT TCAGCATGGG CGTGCTTTAC
CACCGTCGCT CTCCACTGGA TCACTTGGTG CAGCTAAAAG ATCAATTAGT GTCCGGTGGT
GAACTCGTAC TAGAAACACT AGTGATTGAA GGTGATGAGA ATTCAGTGTT GGTTCCAACT
TCTCGTTACG CACAAATGCG CAATGTCTAT TTCTTCCCTT CAGCAAAAGC GCTGAAAGTG
TGGTTAGAGT TGGTAGGATT TGAAGATGTA CGCATCGTTG ATGAAAACGT CACTTCGGTT
GATGAACAAC GTACCACAGA TTGGATGACG CATAACTCTC TGCCAGACTA TCTAGATCCG
AACGACCCAA GCAAGACTGT AGAAGGTTAC CCTGCCCCTC GCCGCGCGGT TCTTGTCGCT
CGCAAACCAT AA
|
|---|
| Protein sequence | MFNFANFYQL IAQDTRLQPW LNVLPQQLTD WQNAEHGDFG RWLKALNKIP EGSPDQIDIK
NSVTISNDTP FHEGELKKLE NLLRTFHPWR KGPYHVHGIH IDTEWRSDWK WDRVLPHISP
LKNRSVLDVG CGNGYHMWRM LGEGARLTVG IDPSHLFLIQ FEAIRKLMGD DQRAHLLPLG
IEQLPKLEAF DTVFSMGVLY HRRSPLDHLV QLKDQLVSGG ELVLETLVIE GDENSVLVPT
SRYAQMRNVY FFPSAKALKV WLELVGFEDV RIVDENVTSV DEQRTTDWMT HNSLPDYLDP
NDPSKTVEGY PAPRRAVLVA RKP
|
|---|
| |