| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003921 |
|---|
| Symbol | |
|---|
| ID | 8557657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2554784 |
|---|
| End bp | 2556370 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646407019 |
|---|
| Product | cytochrome d ubiquinol oxidase subunit I |
|---|
| Protein accession | YP_003286546 |
|---|
| Protein GI | 262394692 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000934813 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGACG TAGTTGATCT ATCGCGGTTG CAGTTTGCAC TGACAGCGAT GTATCACTTC
CTATTCGTAC CATTGACCCT TGGTATGGCC TTCCTTCTGG CCATTATGGA ATCGATGTAC
GTAATGACGA ACAAGCAAAT CTACAAGGAC ATGACCAAGT TCTGGGGTAA GCTATTCGGT
ATTAACTTTG CACTTGGTGT GGCGACAGGC CTTACCATGG AATTCCAGTT TGGTACGAAC
TGGTCTTACT ACTCCCACTA TGTAGGTGAC ATCTTCGGTG CGCCGCTAGC GATCGAAGCC
CTTGTCGCAT TCTTCCTGGA GTCAACTTTT GTTGGTCTAT TCTTCTTCGG GTGGGATCGT
CTATCTAAAC GTCAACACTT AGCGGTTACT TGGCTTGTGG CGCTGGGCTC TAACTTCTCT
GCACTTTGGA TTCTTATCGC AAACGGCTGG ATGCAAAACC CAGTAGGCGC GGACTTCAAC
TTCGAAACCA TGCGAATGGA AATGGTAAGC TTCTCTGAAG TTGTACTAAA CCCAGTTGCT
CAGGTTAAGT TCGTGCATAC GGTTGCTTCT GGCTACACTT GTGGCGCAAT GTTTATTCTA
GGCATCAGTT CATACTACCT ATTAAAAGGT CGTGACATTG CGTTTGCTCG TCGTTCATTT
GCTATCGCTG CTTCTTTCGG TATTGCGGCT ATCTTATCTA CCATCGTTCT TGGCGATGAA
TCTGGCTACG AGCTTGGTGA AGTTCAAAAA GTGAAGCTTG CTGCAATTGA AGCAGAGTGG
CACACAGAAC CAGCTCCAGC AGCGTTTACG TTGTTTGGTG TTCCTAACCA AGAAACCATG
CACACCGATT ACGCAATCAA GATCCCTTAC GTAATGGGTA TCATCGCGAC ACGTTCTTTT
GATGAGCAAG TAACAGGTCT TCGTGACCTA CGTGATGAGC ACGTCGATCG TATTCGTGAC
GGTATGTACG CTTATGAACT TCTCGAGAAG CTTCGTGCGG GCGACAAGTC AGAAGAAAAC
ATGACTGCGT TTGATGAAGT GAAGGGTGAC CTAGGTTACG GTCTACTTCT AAAACGCTAC
ACAGACAATG TTGTTGATGC GACAGAAGAG CAAATCCAAG CTGCTGCGGA TGACTCAATC
CCAACAGTAT GGCCGCTATT CTGGTCATTC CGTATCATGG TTGCTTGTGG TTTCATCATG
CTATTCGTTT TCGGTGCGGC ATTTATTCAA ACGTGTCGTC AGAAGATCGA ACAGAAACAA
TGGATTCTTA AAGCTGCACT ATTCAGCATC CCACTACCGT GGATTGCGAT TGAAGCGGGT
TGGTTCGTCG CTGAGTACGG TCGTCAGCCA TGGGCTGTTG GTGAAATTTT ACCAGTGCAC
GTTGCAGCTT CAGCATTAAC TGCTGGCGAA ATCTGGACTT CACTATTCGC AATTCTGGCG
CTATACACGG TATTCCTGGT TGCAGAAGTT TACCTAATGT TGAAATTCGC TCGTAAAGGC
CCAAGTAGCC TGAAAACGGG TCGCTACCAC TTCGAGCAAA ATGCTGACTC TGTTGAAGAC
AAAGTTAGTC GCCAAGTAGA AGCGTAA
|
|---|
| Protein sequence | MIDVVDLSRL QFALTAMYHF LFVPLTLGMA FLLAIMESMY VMTNKQIYKD MTKFWGKLFG
INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEA LVAFFLESTF VGLFFFGWDR
LSKRQHLAVT WLVALGSNFS ALWILIANGW MQNPVGADFN FETMRMEMVS FSEVVLNPVA
QVKFVHTVAS GYTCGAMFIL GISSYYLLKG RDIAFARRSF AIAASFGIAA ILSTIVLGDE
SGYELGEVQK VKLAAIEAEW HTEPAPAAFT LFGVPNQETM HTDYAIKIPY VMGIIATRSF
DEQVTGLRDL RDEHVDRIRD GMYAYELLEK LRAGDKSEEN MTAFDEVKGD LGYGLLLKRY
TDNVVDATEE QIQAAADDSI PTVWPLFWSF RIMVACGFIM LFVFGAAFIQ TCRQKIEQKQ
WILKAALFSI PLPWIAIEAG WFVAEYGRQP WAVGEILPVH VAASALTAGE IWTSLFAILA
LYTVFLVAEV YLMLKFARKG PSSLKTGRYH FEQNADSVED KVSRQVEA
|
|---|
| |