| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003606 |
|---|
| Symbol | |
|---|
| ID | 8557339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2207420 |
|---|
| End bp | 2209081 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646406701 |
|---|
| Product | High-affinity choline uptake protein BetT |
|---|
| Protein accession | YP_003286231 |
|---|
| Protein GI | 262394377 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACCG ATAATAACGG TGGCATTCAA CGCCCCGATG GAAAGGTAAA CGCGATAGAC
ACTGACTATC AAATTGGTCA GGATAACGTC GCGTTAAAAG TAGGCCCGTT TGGCCTTGAT
ATTCATAACC GTGTTTTTGC AATTTCTGGT TTAGCAATCA TCCTATTTGT TGTAGTAACA
CTATTATTTC GAGAACAGGT AGAGCCGTTT TTCGCAGATC TAAGAGCGGG TTTGTTACAC
CATTTGGATT GGTTCTTTCT CGCATCTGGT AATATTTTTG TCATTGTCTG TGTTGGGTTG
ATTTTTACAC CGCTAGGTCG CGTACGAATC GGCGGTACAG AAGCGACGCC AGATTATTCC
TATGCGGGTT GGTTGGCAAT GCTCTTTGCA GCAGGTATGG GTATCGGTCT GGTGTTCTTT
GGTGTATCAG AACCTATGTC TCATTTTAGT TCTGCTATTG GTGGCGTGAA CGTTGAGAAT
GGTGTTCGTA CTGACTGGGC CCCTCTAGGT GGTGCAGAAG GCGATGCAAG TGCTGCATCT
GCACTAGGCA TGGCGGCGAC GATTTACCAC TGGGCGCTTC ATCCGTGGTC AATCTATGCG
CTATTGGCCC TTGGTTTGGC GATTTTCTCG TTTAACAAAG GCTTACCACT TACCATGCGA
TCCATTTTTT ACCCACTGTT TGGTGAGCGT GTATGGGGTT GGACTGGTCA CATTATCGAC
ATTCTTGCTG TTGTAGCGAC AGTTTTTGGT CTGGCAACGT CCCTAGGTTA CGGTGCGTCT
CAAGCCGCAA CGGGTTTGAA CTTCCTATTT GATGTCCCAA TGACGAATAC TACGCAGGTA
CTATTGATTA TTGGCATCAC CGCACTCGCT TTAATCTCAG TTGTTGCGGG ACTAGACAAA
GGCGTGAAAA TCTTATCTGA GATCAACATG GGTCTCGCTG CGCTTTTACT GCTTTTCGTT
ATTGTTGTCG GCCCGACGAT CGCGATTTTA ACGGGCTTCT TCGAAAATAT AGTGTCATAT
GTGGCTAATA TTCCTGCCCT ATCAATGCCA TTTGGACGAG AAGACGTAAA CTATTCTCAA
GGTTGGACAG CATTCTACTG GGCTTGGTGG ATTTCTTGGT CACCATTTGT CGGTATGTTC
ATTGCGCGTG TATCTCGTGG TCGTTCAGTT CGTGAGTTCA TTATTTGCGT TATCCTTATC
CCTTCTTCTG TTTGTGTGTT ATGGATGACC GCTTTTGGTG GTAACGCTAT AAGCCAATAC
GTGAGCGATG GTTATGAAGC CGTGTTCAAC GCGGAATTAC CGTTAAAACT ATTTGCCATG
TTAGATGTGA TGCCGCTAGC TGAAATTACA TCTTTCGTCG GTATTATTTT GGTGGTGGTA
TTCTTCATTA CCTCTTCAGA CTCTGGTTCA CTGGTTATTG ATACTATTGC TGCGGGCGGT
AAGGTCGATG CGCCAACGCC TCAACGCGTG TTCTGGTGTA CGTTTGAAGG CTTAGTTGCG
ATTGCATTGA TGCTTGGTGG TGGCCTAGCG GCAGCTCAAG CAATGGCCGT GACCACAGGC
CTACCATTTA CGATTGTTCT GCTTGTTGCA ACGGTTTCTC TAGTAAAAGG CTTGATGGAT
GAACCTCGTC CAAAAGCGGC TTCTAAGAAG AAATCGAAAT AA
|
|---|
| Protein sequence | MSTDNNGGIQ RPDGKVNAID TDYQIGQDNV ALKVGPFGLD IHNRVFAISG LAIILFVVVT
LLFREQVEPF FADLRAGLLH HLDWFFLASG NIFVIVCVGL IFTPLGRVRI GGTEATPDYS
YAGWLAMLFA AGMGIGLVFF GVSEPMSHFS SAIGGVNVEN GVRTDWAPLG GAEGDASAAS
ALGMAATIYH WALHPWSIYA LLALGLAIFS FNKGLPLTMR SIFYPLFGER VWGWTGHIID
ILAVVATVFG LATSLGYGAS QAATGLNFLF DVPMTNTTQV LLIIGITALA LISVVAGLDK
GVKILSEINM GLAALLLLFV IVVGPTIAIL TGFFENIVSY VANIPALSMP FGREDVNYSQ
GWTAFYWAWW ISWSPFVGMF IARVSRGRSV REFIICVILI PSSVCVLWMT AFGGNAISQY
VSDGYEAVFN AELPLKLFAM LDVMPLAEIT SFVGIILVVV FFITSSDSGS LVIDTIAAGG
KVDAPTPQRV FWCTFEGLVA IALMLGGGLA AAQAMAVTTG LPFTIVLLVA TVSLVKGLMD
EPRPKAASKK KSK
|
|---|
| |