Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003545 |
Symbol | |
ID | 8557278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 2132452 |
End bp | 2134032 |
Gene Length | 1581 bp |
Protein Length | 526 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646406640 |
Product | choline-glycine betaine transporter |
Protein accession | YP_003286170 |
Protein GI | 262394316 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAATG CATTTAAAAA ATATAGTATC GACACAACAG ACTATCAGGT TGGACAGGAC AACGTTCAAA AGTGGGGATT CGACATACAT AACCCCGTTT TTGGCATCAG TGCGGGTCTC GTTGTTTTTT GTCTAATTTC ACTTCTTCTT GTTGAGCCAA CCACTGCTCG TGATGTATTA AACGGTCTGA AAAACGGAAT TATCGAACAG TTTGATGCGT TCTTTATGTG GTCGACAAAC TTCTTCTTAT TATTCGCTGT TGCTCTTCTT TTTTCTCCGT TGGGTAAAAT CCGCTTAGGT GGCAAAGAAG CAACGCCGGA TCACTCAACC GTTTCTTGGT TGTCGATGCT CTTTGCAGCT GGTATGGGTA TTGGTCTTCT GTTCTGGAGT GTGGCGGAGC CGACCGCGTA CTTCACTGAT TGGTGGGGAA TGCCACTGAA CGCAGTGCCA TACACAGAAG AAGCGAAATC TCTAGCGATG GGTGCCACCA TGTTCCACTG GGGTGTGCAT GGTTGGAGTA TTTACGCACT CGTTGCACTA GCACTTGCGT TTTTTGCTTT TAACAAGGGT TTACCGCTTT CATTGCGCGC GGCGTTTTAT CCAATTTTTG GTGACCGAGC ATGGGGTTGG TTAGGACATG TTATCGACAT TCTTGCCGTT TTATCCACGC TGTTTGGTCT TGCAACGTCG CTGGGTCTCG GTGCTCAGCA GGCGACCAGT GGTATTAACC ATGTCTTTGG TCTAGAAGGC GGCATTGGTA CACAAATGAT TGTGATCATC TTTGTTACCT TTATCGCGGT GCTATCAGTA ATTCGTGGTA TTGATGGTGG TGTTAAACTA CTGAGTAACG TCAATATGGT GGTTGCATTT GCCCTGCTTA TTTTCATTAC CTTTATCACG TTTGATACGG CGTGGGGTTC GCTACGCGAC ACAACAATGG CTTACATTGA AAATATTATT CCGTTGAGCA ACCCCCACGG TCGTGAAGAT GAAACTTGGA TGCACGGCTG GACGGTATTC TACTGGGCTT GGTGGGTATC TTGGTCACCG TTTGTTGGTA TGTTTATCGC GCGTGTGTCT AAAGGTCGTA CGGTTCGAGA ATTCCTGTTC GCAGTGATCG TTATTCCTAC TGTCGTTACC TTGATTTGGA TGTCTGTATT CGGTGGTATC GCGCTTGACC AAGTGGTGAA TAAAGTCGGT GAGCTAGGTG CAAATGGTCT AACTGATATT TCATTGACTC TGTTCCATGT TTACGATGCG CTTCCGTATA GCTCAGTGAT TTCAATGCTT TCTATCGTGC TGATTCTGGT GTTCTTTATT ACATCATCAG ACTCTGGCTC ACTGGTTATC GATAGTATCA CTGCGGGTGG TAAGATTGAT GCACCAATTC CACAGCGTAT TTTCTGGGCT TGTATTGAAG GTGCAATTGC AGCTGTTATG CTTTGGGTTG GTGGTAAAGA AGCCTTGCAA GCATTGCAGT CCGGTGTGGT TGCAACGGGA TTACCGTTTA CCTTTGTTCT GTTGTTGATG TGTGTAAGCT TGGTTAAAGG GTTAAGAACC GAACTGTCAG CTTACAAATA A
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Protein sequence | MDNAFKKYSI DTTDYQVGQD NVQKWGFDIH NPVFGISAGL VVFCLISLLL VEPTTARDVL NGLKNGIIEQ FDAFFMWSTN FFLLFAVALL FSPLGKIRLG GKEATPDHST VSWLSMLFAA GMGIGLLFWS VAEPTAYFTD WWGMPLNAVP YTEEAKSLAM GATMFHWGVH GWSIYALVAL ALAFFAFNKG LPLSLRAAFY PIFGDRAWGW LGHVIDILAV LSTLFGLATS LGLGAQQATS GINHVFGLEG GIGTQMIVII FVTFIAVLSV IRGIDGGVKL LSNVNMVVAF ALLIFITFIT FDTAWGSLRD TTMAYIENII PLSNPHGRED ETWMHGWTVF YWAWWVSWSP FVGMFIARVS KGRTVREFLF AVIVIPTVVT LIWMSVFGGI ALDQVVNKVG ELGANGLTDI SLTLFHVYDA LPYSSVISML SIVLILVFFI TSSDSGSLVI DSITAGGKID APIPQRIFWA CIEGAIAAVM LWVGGKEALQ ALQSGVVATG LPFTFVLLLM CVSLVKGLRT ELSAYK
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