Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003483 |
Symbol | |
ID | 8557216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 2064662 |
End bp | 2065432 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646406578 |
Product | spermidine putrescine ABC transporter permease component PotC |
Protein accession | YP_003286108 |
Protein GI | 262394254 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000553951 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGACGCA CAGTTAGATT TAGCTTTATG GCGTTGGTTT ATGCATTTTT GTATCTGCCA ATCGTTGTAC TAATCGTAAA TTCATTTAAC GCCAATAAAT TTGGTATGAA ATGGGGTGGT TTCACCACGA AATGGTATGA AACCCTAGTC AACAACGACA GCCTAATGCA GGCTGCATGG CACTCATTGA ACGTGGCGGT ATTTTCTGCA ACAGCGGCTA CTATTATTGG TAGCTTAACA GCGGTTGCCC TATTCCGTTA CTCGTTCAAA GGCAAAGGTG CTGTAAACGG CATGCTGTTT GTCGTAATGA TGTCTCCAGA TATTGTCATG GCGATTTCAT TACTTGCTCT TTTCCTAGTA TTAGGCGCAC AGCTGGGCTT CTTTACTCTA TTGATTGCCC ACATCACCTT CTGTTTGCCA TTTGTGGTGG TAACCGTATA CAGCCGCTTA AATGGCTTCG ATGTGAAGAT GTTGGAAGCA GCAAAAGATC TTGGCGCAAG TGAATGGGTT ATCTTAAAGC AGATCATCCT TCCTCTTGCA AAACCAGCAG TTGCGGCAGG CTGGCTGCTT AGCTTTACCC TGTCTCTGGA CGACGTAATT ATTAGTTCGT TCGTAACAGG TCCAACGTAT GAAATCCTAC CATTGAAAAT TTACTCGATG GTTAAGGTGG GTATTTCACC GGAAGTGAAT GCTCTTGCAA CGGTCATGTT GGTGGTTTCT TTAATTCTTG TCGTAATTTC TCAGTTGCTC GCAAGAGAAA AAGTAAAGTA A
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Protein sequence | MGRTVRFSFM ALVYAFLYLP IVVLIVNSFN ANKFGMKWGG FTTKWYETLV NNDSLMQAAW HSLNVAVFSA TAATIIGSLT AVALFRYSFK GKGAVNGMLF VVMMSPDIVM AISLLALFLV LGAQLGFFTL LIAHITFCLP FVVVTVYSRL NGFDVKMLEA AKDLGASEWV ILKQIILPLA KPAVAAGWLL SFTLSLDDVI ISSFVTGPTY EILPLKIYSM VKVGISPEVN ALATVMLVVS LILVVISQLL AREKVK
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