| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003379 |
|---|
| Symbol | |
|---|
| ID | 8557112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1935268 |
|---|
| End bp | 1936239 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646406474 |
|---|
| Product | immunogenic protein |
|---|
| Protein accession | YP_003286004 |
|---|
| Protein GI | 262394150 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAAGT TTAAGCAAAT CGCACTTGCT GCTTCTTTAG CGGCACTCAC AACTGGCTTT
TCTGCGTCTG CGGAAGAAAC GTTTGTCACG ATTGGTACTG GTGGCGTAAC AGGGGTTTAT
TATCCGACTG GTGGAGCAAT TTGTCGCTTG GTTAACAAAT CGCGAGAAGA TCACGGTATC
CGTTGTTCGG TAGAAAGTAC TGGGGGATCG ATTTATAACA TCAACACTAT TCGTGCTGGT
GAATTGGATC TCGGTATCGC TCAATCAGAC TGGCAGTATC ATGCTTACAA AGGAACCAGT
AAGTTTAAGG AAAGCGGGCC TTTTAAAGAA CTACGCGCCG TATTCTCCGT TCATCCAGAA
CCGTTCACTG TCGTTGCACG TAAAGACGCG AACATCAAAA CTTTTGATGA TTTGAAAGGT
AAGCGCGTCA ACATTGGTAA CCCTGGCTCA GGTCAACGAG GCACCATGGA AGTGTTAATG
AGCCAGTATG GCTGGAGTAA CGATGACTTT AAGCTTGTGT CTGAGTTAAA AGCAGCAGAG
CAATCAAAAG CACTTTGTGA TAACAAAATT GATGCGATGA TTTATACCGT TGGTCACCCA
AGTGGAGCGA TTAAAGAAGC CACTACGTCG TGTGATAGTA ATATCGTAAC GGTAGCTGGA
CCTAATGTAG AAAAATTGGT TGCAGACAAT AGCTTTTATC GTGTCGCAAA TGTACCGGGT
GGTATGTATC GTGGCACAGA TAGTGATGTT CAAACCTTTG GTGTTGGTGC GACGTTTGTT
TCCTCTACTG CGGTACCAGA AGATGTGGTT TATAACGTGG TCAAAGCGGT ATTTGAAAAC
TTCGATGATT TCCGCCGTCT CCACCCAGCG TTTGCGAACT TGAAGAAAGA GGAAATGGTA
AAAGACGGTT TATCTGCGCC TCTTCACCCA GGTGCGCTCA AATACTACAA AGAAGTAGGG
CTGATTAAGT AA
|
|---|
| Protein sequence | MFKFKQIALA ASLAALTTGF SASAEETFVT IGTGGVTGVY YPTGGAICRL VNKSREDHGI
RCSVESTGGS IYNINTIRAG ELDLGIAQSD WQYHAYKGTS KFKESGPFKE LRAVFSVHPE
PFTVVARKDA NIKTFDDLKG KRVNIGNPGS GQRGTMEVLM SQYGWSNDDF KLVSELKAAE
QSKALCDNKI DAMIYTVGHP SGAIKEATTS CDSNIVTVAG PNVEKLVADN SFYRVANVPG
GMYRGTDSDV QTFGVGATFV SSTAVPEDVV YNVVKAVFEN FDDFRRLHPA FANLKKEEMV
KDGLSAPLHP GALKYYKEVG LIK
|
|---|
| |