| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003238 |
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| Symbol | |
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| ID | 8556971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1800135 |
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| End bp | 1803206 |
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| Gene Length | 3072 bp |
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| Protein Length | 1023 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646406333 |
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| Product | type I restriction-modification system restriction subunit R |
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| Protein accession | YP_003285863 |
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| Protein GI | 262394009 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTAGTA AAACAAATGA ACAGGCGCTA GAAGCAGCAA TAGAGAAAGG CTTAGCTGGT
ATTTGTAGAG AAGAGTTAGC GTTGGGTGAC GCGCCTCTAA ACTACAACAA TGAACTCTAT
CTTGTCGGTT TTCCAAGTGA CTTCGACAAA CAATATGCCC TAGATACACG TTTCTTCTGG
CAGTTTCTTG AAGAGACACA AGCGAGTGAG TTAGACAAGC TAAAGCGCAC CAGCCCTCAT
GATTGGCAAA GAAAAATCCT TGAACGTTTT GATCGTATGA TTAAGCGCAA GGGTGTTTTG
AGCCTACTTA AAAAGGGCTT GGAGGTTGAT GACGCTTTCC TCACTCTAAT GTACCCAGCT
CCGCTTGTTA GTAGCTCAGA AAATGTAAAA AAGAACTTCT CTGCCAATAT TTTTAGCGTG
ACACGACAGG TTTGTTATTC CAATGCGAAT CCGTTGGAAG AGATTGATAT GGTTCTTTTT
ATAAATGGTA TCCCGTTGAT TACCCTTGAG CTTAAAAATA AATGGACGGG TCAGAACGCA
GCTTATCATG GTCAAAATCA GTATCGGAAT GATAGAGATG CAAATCAACC ATTGCTGAAC
TTTGCTCGTT GTTTGGTTCA TATGACGGTA GATACCGATG AAGTCTATAT GACGACCAAA
CTGGCAGGTA AAAAGACATT CTTCTTACCG TTCAATAAAG GCTTCAACCT AGGTAAAGGA
AACCCCACTA ACCCGCACGG CCACAAGACG GCTTACTTGT GGCAAGAGGT GTTCCGCAAA
GAAAGCATCG CTAATATTAT TCAGCACTTT GTTCGTCTTG ATGGCAGCAG TAAAAAGCAG
TTGGATAAAC GAACTTTGTT CTTCCCTCGA TACCACCAAA TGGATGTCGT ACGTCGCTTG
GTTGATCATT GCTCAGTTAA TGGTGTTGGG CAAACGTATT TGATACAGCA CTCAGCGGGT
TCAGGTAAGT CTAACTCAAT TACATGGGCT GCGTATCAGC TCATCGAAAC TTATCCTATT
AGCGATGATC TACCAGGAAG TAGAGGGAAA GAAGTGCCTC TATTCGATTC GGTTATCGTC
GTTACCGACC GCCGATTGCT TGATAAGCAG CTACGCGACA ATATTAAAGA GTTCTCCGAA
GTGAAGAACA TTGTTGCACC AGCGTTCAAA TCGTCTGAGC TAAAGTCTGC ATTAGAGAGT
GGCAAGAAAA TTATCATTAC CACCATTCAG AAGTTTCCGT TCATTATTGA TGGTATTGCA
GATTTAAGTG ACAAGCGCTT TGCCGTCATT ATTGATGAGG CTCACAGCTC TCAGTCAGGC
TCCGCTCATG ACAATATGAA CCGTGCAATG GGTAAGAAGG AAGTGGAAGA GCTGGAAGAT
GCTCAGGACA AAATCCTACA GGCAATGCGC TCTCGTAAGA TGCGTGGAAA TGCCTCTTAT
TTTGCGTTCA CCGCAACGCC TAAAAACACC ACTCTAGAAA AGTTTGGTCA GCGACAAGCG
GACGGAACTT ACGCTCCTTT CCATTTGTAT TCGATGAAAC AAGCGATCGA AGAAGGCTTC
ATTCTCGATG TTATTGCCAA CTACACGACT TATAAGAGTT ATTACGAGAT TGAAAAATCA
ATCCAAGATA ACCCTGAGTT CGACAGTAAA AAAGCGCAGA AGCGTTTGCG AGCGTATGTA
GAGGCAAGCC AAGAAACCAT AGATACCAAA GCCGAGATCA TGCTTGAACA TTTTATCAAA
CATGTGATTA ACGGTAAGAA GCTTAAAGGT AAAGGCAAAG GCATGGTGGT TACTCAAAAT
ATTGAGTCAG CTATCCGCTA CTATCGAGCG TTAACAAGGC AACTCGATAA GATGGGTAAC
CCATTTAAAG TCGCGATTGC CTTCTCTGGC ACCAAAGAAG TTGATGGTAT TGAATACACT
GAAGCAGATC TTAATGGGTT CCCAGAAGGT GATACCAAAG ATTACTTTGA TGTGAACTAC
AAGCGTAAGG AGTCGGACTC CCCAATTCCT AAGCATGTAG ATCAGGATGC TTTTCGTTTG
TTGGTCGTGG CGAATAAGTA TTTGACAGGT TTTGACCAAC CGAAGCTTTG TGCCATGTAT
GTGGATAAAA AACTGGCGAG TGTACTGTGT GTGCAAGCGC TGTCTCGCTT GAACCGTTCA
GCACCAAAGT ACGGTAAGAA AACGGAAGAT CTGTTTGTGT TGGATTTCTT CAACTCAGTG
GATGATATCA AAACCGCATT CGACCCTTTC TATACATCGA CAACGCTTTC TGAAGCCACT
GATGTCAATG TTCTTCATGA GCTAAAAGAT GATATGGACG ACACGGGTGT TTATGAGTGG
TTTGAAGTTG AGGAGTTCAA CAAGCGTTTC TTTGAAGGAA GAGATGCTCA GGACCTAAGC
CCAATCATTG ACATCGCAGC TGCGCGTTTT AACCACGAGT TAGAATTAGA AAACGAATTT
AAAGTCGATT TCAAAGTGAA GGCCAAGCAG TTTGTGAAAA TCTACGGCCA GATGGCATCT
ATCATGCCTT ATGAGGTCGT TCAGTGGGAA AAACTGTTCT GGTTCTTGAA GTTTTTGATT
CCAAAACTTT CCGTCGAAGA CCCAGATAAA GAGGCATTAG ACTCGTTACT AGACTCAGTC
GATTTGAGTT CTTATGGATT ACAAAGGGTT AAGCTTAATT ATTCCATCGA GCTAGATGAC
TCTGAAACTG AGTTAGATCC TCAAAACCCG AACCCGCGCG GAGCTCATGG TCCTGAAAGT
GAAAAAGACC CGTTAGATGA GATCATCCAA ATCTTTAACG AACGTTGGTT TCAAGGTTGG
AGCGCAACAC CAGAAGAGCA ACGCGTTAAG TTTGTGAACA TTGCTGAGAG CATCCGTAAT
CACCCAGACT TCGAAGCTAA ATACCAAAAC AATGCCGACC CTCATACGCG AGAGCTGGCG
TTTGAGAAGA TGTTGAAAGA AATCATGCTT CAACGCCGTA AAGACGAATT AGAACTCTAC
AAGCTGTTTG CACAAGACCC TGCTTTTAAA GCATCGTGGA CGCAAAGCAT GCAGCGTATG
GTTGGGATGT AG
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| Protein sequence | MVSKTNEQAL EAAIEKGLAG ICREELALGD APLNYNNELY LVGFPSDFDK QYALDTRFFW
QFLEETQASE LDKLKRTSPH DWQRKILERF DRMIKRKGVL SLLKKGLEVD DAFLTLMYPA
PLVSSSENVK KNFSANIFSV TRQVCYSNAN PLEEIDMVLF INGIPLITLE LKNKWTGQNA
AYHGQNQYRN DRDANQPLLN FARCLVHMTV DTDEVYMTTK LAGKKTFFLP FNKGFNLGKG
NPTNPHGHKT AYLWQEVFRK ESIANIIQHF VRLDGSSKKQ LDKRTLFFPR YHQMDVVRRL
VDHCSVNGVG QTYLIQHSAG SGKSNSITWA AYQLIETYPI SDDLPGSRGK EVPLFDSVIV
VTDRRLLDKQ LRDNIKEFSE VKNIVAPAFK SSELKSALES GKKIIITTIQ KFPFIIDGIA
DLSDKRFAVI IDEAHSSQSG SAHDNMNRAM GKKEVEELED AQDKILQAMR SRKMRGNASY
FAFTATPKNT TLEKFGQRQA DGTYAPFHLY SMKQAIEEGF ILDVIANYTT YKSYYEIEKS
IQDNPEFDSK KAQKRLRAYV EASQETIDTK AEIMLEHFIK HVINGKKLKG KGKGMVVTQN
IESAIRYYRA LTRQLDKMGN PFKVAIAFSG TKEVDGIEYT EADLNGFPEG DTKDYFDVNY
KRKESDSPIP KHVDQDAFRL LVVANKYLTG FDQPKLCAMY VDKKLASVLC VQALSRLNRS
APKYGKKTED LFVLDFFNSV DDIKTAFDPF YTSTTLSEAT DVNVLHELKD DMDDTGVYEW
FEVEEFNKRF FEGRDAQDLS PIIDIAAARF NHELELENEF KVDFKVKAKQ FVKIYGQMAS
IMPYEVVQWE KLFWFLKFLI PKLSVEDPDK EALDSLLDSV DLSSYGLQRV KLNYSIELDD
SETELDPQNP NPRGAHGPES EKDPLDEIIQ IFNERWFQGW SATPEEQRVK FVNIAESIRN
HPDFEAKYQN NADPHTRELA FEKMLKEIML QRRKDELELY KLFAQDPAFK ASWTQSMQRM
VGM
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