| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003127 |
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| Symbol | |
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| ID | 8556860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1698905 |
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| End bp | 1700446 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646406222 |
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| Product | L,D-transpeptidase YcbB |
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| Protein accession | YP_003285752 |
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| Protein GI | 262393898 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00544147 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGCAC TTATGGTGCC GTTTTTCAGC TTTTCTACCG TCGTTTCTCT CGAAGCTTCT
GCACAAACAG AGCAAGAGGG AGCGGTACAA AAGCTGTCTG TCGAAAAAAT GATCCATTAT
CCAGAGGTGA TTGACCAGCT TTATCAAAGT ACTAATTACC GTTTGAACTG GGAAAATGAA
AGCGATATTG AGCAGTTTCT TTTTCAAGTA AACCTGGTTG CTCTTGCTGG CGTCACGGAC
GAATTCGAGA ATCAACTCCA TCGTATAAAC CAAGTTCGAT GGCAGGGAGA TAACCTCGAC
TTTGATTTGG TAATGACAGA TTCACTCTTG ATGTATCTCA GCTATCTCGA GCAGCTCCCT
GAAGAAGGTA TCAATTGGTT ATTTGCTAAC AAAGCCCACG TGATTTTACC TGCTCCTAGC
ATCGATACTT TGTCCGTACT GAGTAACGAA ATTACGGTAG GCAAACTTAG TCAATTCTTA
GCAAGCCTTC GCTCTCCTTT ACAAACGGAC GAAGCTTTTT ATTCCGCTTA CTCCTCTTTA
TCCGAGCACG CTAAGTATCA ATATCCAATC TATGAACAAA CGGGCCTTGC CCGTGTCGGT
GACCAATTAG AAAATAAACC GCTTCTGATT GAGCGTATGG AAGTGGTTGG TGTGGATGTA
TCGTATTTAG ATATCACGAC CCAACAGTAT GATGAAGAAT TAGAGTTAGC GGTGAAAGAG
TTTCAGCGTA TTCATGGCTT GAAAGAAGAT GGGGTGATTG GCCCGAATAC CATTCGATGG
ATCAACTTTT CTCCTCAAGA ACGATTGCAT CTATTGGCGC TGAACTCAGA ACGTTCAAGG
ATTTGGTCCA AAGACAGAGA TAATGTTGTC TTTGTAAATG TACCTGGATA CGAAGTGACG
TATTGGCACG ATGGTCAACC GTTGTTCGAG TCTAAAGTTG TGGTTGGCAG AGCCTCAAGA
AAAACACCAA TCATGTCGGG GACTCTTGAC TCCGTCATTC TCAACCCCAC ATGGAATGTG
CCATGGACCA TAATGGTGAA AGACATCATT CCTAAAGTGA AACGTAATCC GATGTATTTG
ATTAACCACA ACATTCAAAT CATCCGGTCT TGGACTTCAA ACGAAATTAT TGACCCTACA
ACCATCAATT GGGCGACGGT GAATCCGAGA ACATTTCCTT ATCGTATGCG ACAGGCATCG
GGATTACACA ATGCATTGGG ATTGTATAAG TTTAATATGC CAAACCCCCA AGCTATCTAT
TTGCATGATA CGCCAAGTAA AAACTTGTTC GAACGAGATA GACGCGCATT CAGTTCCGGG
TGTGTCCGCG TTGAACATGC CGACCAACTG GCGGAGCTCT TATTCAAAAC TCAGGGACTA
GAAGAGCGCT TAGCGAAAAA ACGGGAAAGT ACGCGTCGCT CTAATACGTC GGTTCCTTTA
GGAGAACGCA TCCAAGTGCA CATTATTTAT CAAACCGCAT GGCTAGAAGA GGGAACACTT
TACTACCGAG ATGATATCTA TAAATACGAT CACCGTAGTT GA
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| Protein sequence | MTALMVPFFS FSTVVSLEAS AQTEQEGAVQ KLSVEKMIHY PEVIDQLYQS TNYRLNWENE
SDIEQFLFQV NLVALAGVTD EFENQLHRIN QVRWQGDNLD FDLVMTDSLL MYLSYLEQLP
EEGINWLFAN KAHVILPAPS IDTLSVLSNE ITVGKLSQFL ASLRSPLQTD EAFYSAYSSL
SEHAKYQYPI YEQTGLARVG DQLENKPLLI ERMEVVGVDV SYLDITTQQY DEELELAVKE
FQRIHGLKED GVIGPNTIRW INFSPQERLH LLALNSERSR IWSKDRDNVV FVNVPGYEVT
YWHDGQPLFE SKVVVGRASR KTPIMSGTLD SVILNPTWNV PWTIMVKDII PKVKRNPMYL
INHNIQIIRS WTSNEIIDPT TINWATVNPR TFPYRMRQAS GLHNALGLYK FNMPNPQAIY
LHDTPSKNLF ERDRRAFSSG CVRVEHADQL AELLFKTQGL EERLAKKRES TRRSNTSVPL
GERIQVHIIY QTAWLEEGTL YYRDDIYKYD HRS
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