| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002989 |
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| Symbol | |
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| ID | 8556719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 1538853 |
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| End bp | 1539797 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646406082 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_003285616 |
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| Protein GI | 262393762 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0445865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAAA TAAGAACAAA AGTCCAGTTC GTCGACATTG ACGAAGATAT GGCGGGTCAG
CGCATTGATA ATTTTTTGCG CAACCAATTA AAAGACATCC CTAAAAGCAT GATTTACCGA
ATCGTGCGTA AGGGCGAAGT ACGTGTAAAT AAAAAGCGTA TAAAAGCAGA GTACAAGTTA
AAAGCAGGCG ATCTCGTTCG TATTCCACCG GTGACAGTCG AGAAAAAAGA TGACGATGTC
GCGCCAAGTA CGAAACTAAA CAAAGTCGCA GAGTTGGAAG ATATGATCAT CTTCGAAGAT
GATCATATGT TGATTCTAAA CAAACCATCT GGCACCGCTG TGCATGGTGG CAGTGGCTTA
AAGTTTGGCG CGATTGAAGC GCTTAGAGCT CTTCGTCCTC AAGCTCGCTT TCTTGAACTT
GTGCATCGTA TTGACCGTGA TACTTCAGGT ATCTTATTGG TTGCTAAGAA GCGTTCTGCA
CTTCGTCACT TGCAAGCCCA GTTTCGTGAA AAGACAGTGA AGAAGTTTTA CTTAGCTCTT
GTCATGGGAC AATGGAAAAG CAGTTGTAAG GTTGTGAACG CGCCACTGCT TAAAAACGAA
GTGAACAGTA TTGTTCGTGT TAACCCTAAC GGTAAGCCGT CTGAAACGCG TTTTAAGATT
TTGGAAAAGT TTGAACAAGC AACATTGATT CAAGCGAGTC CGATTACTGG TCGAACTCAC
CAAATCCGAG TTCATACACA ATACACGGGC CACCCAATCG CTTGGGATGA TCGCTACGGT
GACCGCCGCT TTGATGCTTA CACAGGTCAA GTTGGTTTAG ATCGTTTGTT CCTACACGCG
GCAAACATCA AGTTTCAGCA CCCATCAAAT GATGAGTGGA TGGAAATCAA CGCACCGATG
GAACCGAAGT TAGAAAAAGT GTTGGCGGGT TTAAGAAACG CGTAA
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| Protein sequence | MSEIRTKVQF VDIDEDMAGQ RIDNFLRNQL KDIPKSMIYR IVRKGEVRVN KKRIKAEYKL
KAGDLVRIPP VTVEKKDDDV APSTKLNKVA ELEDMIIFED DHMLILNKPS GTAVHGGSGL
KFGAIEALRA LRPQARFLEL VHRIDRDTSG ILLVAKKRSA LRHLQAQFRE KTVKKFYLAL
VMGQWKSSCK VVNAPLLKNE VNSIVRVNPN GKPSETRFKI LEKFEQATLI QASPITGRTH
QIRVHTQYTG HPIAWDDRYG DRRFDAYTGQ VGLDRLFLHA ANIKFQHPSN DEWMEINAPM
EPKLEKVLAG LRNA
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