| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002988 |
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| Symbol | |
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| ID | 8556718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1535130 |
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| End bp | 1538204 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646406081 |
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| Product | ribonuclease E |
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| Protein accession | YP_003285615 |
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| Protein GI | 262393761 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAATTA ACGCAACTCA AAAAGAAGAG TTGCGTGTCG CTCTGGTTGA TGGCCAGCGA
CTTTTCGATC TTGATATCGA GAGTCCAGGT CATGAATCTA AAAAAGCGAA TATCTACAAA
GGACGTATCA CACGTATCGA ACCAAGCTTA GAAGCCGCAT TTGTTGATTA CGGCGCCGAG
CGTCACGGTT TCCTCCCTCT CAAAGAAATT GCCCGCGAAT ATTTCCCTGA AGGTTACACC
TACCAAGGTC GTCCAAGCAT CAAAGAAGTG CTAACGGAAG GCCAAGAAGT TATCGTTCAA
GTGGAAAAAG AAGAACGTGG AAGCAAGGGC GCAGCTCTTA CTACTTTCAT TTCTCTTGCT
GGTAGTTACC TTGTTCTTAT GCCTAACAAC CCTCGTGCTG GCGGTATTTC TCGCCGAATC
GAAGGTGACG AGCGTACTCA ACTAAAAGCC GCATTAAGTA CTTTGGAACT GCCTCAGGGC
ATGGGCCTAA TCGTACGTAC TGCTGGCGTT GGCAAGAGTG CCGAAGAACT TGAGTGGGAT
TTGAATGTAC TACTTAACCA CTGGGGTGCA ATCAAAGGTG CAGCGGACTC TAACCCTGCT
CCATTCTTAA TCCACCAAGA AAGTAACGTT ATCGTTCGTG CAATCCGTGA CTATTTACGT
CGTGATATTG GCGAAATCTT AATTGACAGC AACACCATCT ACGAACGTGC AAAAGAGCAC
ATTCAATTGG TGCGCCCTGA TTTCCTTAAC CGCGTTAAGA AATATGAAGG CGAAGTTCCA
CTATTCAGCC ACTACCAAAT CGAAAGCCAA ATTGAATCAG CTTTCCAACG TGAAGTGCGT
CTGCCATCTG GTGGTTCTAT TGTTATTGAC CCAACCGAAG CACTAACGTC TATCGATATC
AACTCTGCTC GTGCAACCAA GGGCGGCGAT ATTGAAGAAA CAGCTCTAAA CACGAACCTA
GAAGCAGCCG ACGAAATTGC TCGCCAGTTA CGTCTACGTG ACTTGGGTGG CTTAGTGGTT
ATCGACTTTA TCGATATGAC ACCTGTTCGC CACCAACGAG AAGTAGAAAA CCGTCTACGT
GAAGCCGTTC GTCTTGATCG CGCTCGTGTA CAAATCGGTC GTATTTCTCG CTTTGGTTTG
TTGGAGATGT CACGTCAACG TTTAAGCCCT TCTCTAGCAG AAGCAAGCCA CCACATCTGT
CCTCGCTGTA GCGGTACTGG AGTCGTTCGC GACAACGAAT CTCTAGCACT TTCTGTGCTT
CGTTTAATCG AAGAGGAAGC ACTGAAAGAC AATACAGCGC AAGTTCTCGC AGTTGTACCT
GTGCCAATCG CTTCTTACTT GTTGAACGAA AAACGTCGTT CAGTTAACCA TATCGAACGC
ATTCAAGAAG TGAAGATTAC GGTTGTTCCA AACTCTGACA TGGAAACGCC GCACTTCGAA
GTTATCCGTG TTCGTGAAGG TGAAGAGTTC GATCTGATTT CTTACCTACT TCCTAAAAAA
CTGGAAGCAA TGAAAGAAGC GGAAGGTAAA GAGCCAGCGG AAGTTGACGT AAAACCTAAA
CGAATCGAAG AACCTGTTCT TAAAGGCTTT GCGGCTCCTT CTCAAACGGC ACCTGCACCA
GCAGCTAAAC CTGCCCCTGA GGCGAAGAAG AAAGAACAGA AAGTTGAACA AGAAGAAAAA
CCTGGACTGT TCAGCCGTTT GTTTAAAGCA CTTGGTAGTT TCCTATTCGG CGGTTCTGAA
GAGGTAAAAG AAGAACCGAA ACCTCAGGAA GAGAAAAAGC CAAATCGCGA TAATCGACGC
AACAAACGTG ATCGCAATGA TCGTCGTCGC AATAACAACC AACGCGATAA TCGTGAGAAC
CGCGACAATC GTGATAACCG TGATAACCGA CGTCGTCGTA AGCCTCGTGA TGAGCAAGCG
AATGAGCAAA ACGAAGCGCA ACAACAAACC AATAAACAGC AAAACCGCAA CCAAAAGCGT
AAGCCTAAAG CTCAACAAGC AGACAAAGCC CAAGAGCAAA AAGCAAATGC AAAAGTAGCG
GAAAAAGGCC TGCAGCTAGC GGCAGAAGCT CGAACTGAAA CAAAACCAGA AGAGAGCAAA
CCAAAGCAAC AAAACGCGAA AGCAGAAAAA GTGAAGGAGC GTCGCCAACG TCGCAAACTG
AACAAGTCTG TACGCGTTAA AGACCAAGAA GCGGTTGAGA AGAAAACAGA AGAAACGGCG
GTTAAGACTC AAGAAATGGT TGAAACCAAA GTTGAGAAGC CAACAGAAGC AGCGGTAGAA
ACACAGCAAG ACAACAAGCA AGCAGAGTCT AAGCAACGTC GTAACCGTCG TTCGCCACGT
CACCTGCGTG CAAGCGGTCA GCGCCGTCGC CGTGGTCGCG ATCGCCGTCC TAACCCGTTC
CGCCTGCGTA AAGGTGGTGT AGCTTCTCCT GAGATGGCTA TGGGTAAAGT AATGCCACGC
TACATTCCGA AACCAGCACC TAAGAAAGAA GAGCAAGTTA AGGAAGAAGC AGTAGCAGCA
GTACCTACAA TGCAAGGTGG TTTTGCTTGC CCAGAAATGG CTATGGGTAA AGTGATTATT
CGCCGCGAGC AACCTGTTGT AACAGAAGCA CCAGTTGTTG AATCAAAGGT TCAAGAAACA
GTTGAAGCGA AAGTTGAATC TCCAGCAGTA GAAGCACCTG TTGTGGAAGC AGTAATCGCA
GAAAAAACTG AATCGGCAGT AGTAGAAACA GCCTCTGTAG AGCCTATCGT TGAAACTCCT
GCAACTGAAC ATGCTGAACC GGTTGATGCC ATTGTAGAAA CGGCACCAGC TGAAGAGCCT
GTGGTTGAAG CAGCAAAAGA GATTGCAGCC GAAGCGCCAG TAGCTAAACC AGAGCCTAAA
GTCGAAGCCA TTAAAGTTGC TGCTAAGCTA AACGCTAGCG CACCGATGAC AAAAGCACCT
GGCCCTCAAG AGCTACGCGA AATCACTGTT GCAGCAGCGC CGTTCAAAAC CGAACGTTAC
CAAGCTAAAG GTGCGGGTAG CCAAGTGGCT AAAAACCGCG CATCGGCAGA GATGACAAAG
CCTAACTTTA ACTAG
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| Protein sequence | MLINATQKEE LRVALVDGQR LFDLDIESPG HESKKANIYK GRITRIEPSL EAAFVDYGAE
RHGFLPLKEI AREYFPEGYT YQGRPSIKEV LTEGQEVIVQ VEKEERGSKG AALTTFISLA
GSYLVLMPNN PRAGGISRRI EGDERTQLKA ALSTLELPQG MGLIVRTAGV GKSAEELEWD
LNVLLNHWGA IKGAADSNPA PFLIHQESNV IVRAIRDYLR RDIGEILIDS NTIYERAKEH
IQLVRPDFLN RVKKYEGEVP LFSHYQIESQ IESAFQREVR LPSGGSIVID PTEALTSIDI
NSARATKGGD IEETALNTNL EAADEIARQL RLRDLGGLVV IDFIDMTPVR HQREVENRLR
EAVRLDRARV QIGRISRFGL LEMSRQRLSP SLAEASHHIC PRCSGTGVVR DNESLALSVL
RLIEEEALKD NTAQVLAVVP VPIASYLLNE KRRSVNHIER IQEVKITVVP NSDMETPHFE
VIRVREGEEF DLISYLLPKK LEAMKEAEGK EPAEVDVKPK RIEEPVLKGF AAPSQTAPAP
AAKPAPEAKK KEQKVEQEEK PGLFSRLFKA LGSFLFGGSE EVKEEPKPQE EKKPNRDNRR
NKRDRNDRRR NNNQRDNREN RDNRDNRDNR RRRKPRDEQA NEQNEAQQQT NKQQNRNQKR
KPKAQQADKA QEQKANAKVA EKGLQLAAEA RTETKPEESK PKQQNAKAEK VKERRQRRKL
NKSVRVKDQE AVEKKTEETA VKTQEMVETK VEKPTEAAVE TQQDNKQAES KQRRNRRSPR
HLRASGQRRR RGRDRRPNPF RLRKGGVASP EMAMGKVMPR YIPKPAPKKE EQVKEEAVAA
VPTMQGGFAC PEMAMGKVII RREQPVVTEA PVVESKVQET VEAKVESPAV EAPVVEAVIA
EKTESAVVET ASVEPIVETP ATEHAEPVDA IVETAPAEEP VVEAAKEIAA EAPVAKPEPK
VEAIKVAAKL NASAPMTKAP GPQELREITV AAAPFKTERY QAKGAGSQVA KNRASAEMTK
PNFN
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