| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002869 |
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| Symbol | |
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| ID | 8556597 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 1396080 |
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| End bp | 1398098 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646405960 |
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| Product | 5-methylaminomethyl-2-thiouridine-forming enzyme MnmC |
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| Protein accession | YP_003285496 |
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| Protein GI | 262393642 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00103068 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTCAA TAAAAAACGC AGAACTTGGT TGGAACGAAG CTGGTACTCC GGTTTCAGAC
CAATTTGATG ATGTTTACTT CTCTAACGTA AACGGTCTTG AAGAGACACG CTACGTTTTC
TTAAAACAAA ATCATCTCCC AGAAAGATGG CAGGAATTTG ACCAAAGACG TTTTGTCATT
GGTGAAACAG GATTTGGCAC GGGATTAAAC TTCTTAGCAG TATGCCAGTG GTTTAGTGAG
TTTCGTCGTC AGCATCCAGA CGCAACATTG AAAGAACTGC ATTTTATTAG TTTTGAAAAA
TACCCGCTAA GCCAAGCGGA TTTAAAGAAG GCGCATGAAG CTTGGCCTGA GCTAGCTGAG
TACGCGGAAA AGTTACAAAA ACACTACCCT GCCGCCGTAC CTGAGTGTCA CCGCATTGTG
CTTGAAGATG GCGCAATTAC ACTCGACCTT TGGTTTGGTG ACATCAAAGA CTGCATGCCG
CAAGTGCCTT ATGACGAACA AGGACTGATT GACGCTTGGT TCTTAGATGG ATTCGCGCCA
AGCAAAAACC CAGAGATGTG GAACCAAAAT CTGTTCAACA ACATGGCTAA GTTAGCCAAG
CAAGACTGTA CAGTTGCCAC TTTTACCGCA GCGGGCTTTG TGCGTCGAGG ATTGAACGAA
GCAGGCTTTG CAATGAAAAA AGTCAAAGGC TTTGGCACCA AGCGTGAAAT GATCGCCGGT
TCGATGGAAC AACGCGAAAA ACACTCGAAC CATCTTCCGT GGTTCAATCG CACGGCGTCC
AGCAATCTTG ATTCGATTGC CATAATCGGA GGCGGTATTG CCAGCGCGGC GTTAGCGAAA
ACGTTGGTTC GTCGTGGCCA AAACGTCACG CTTTACTGCA AAGACACTCA ACCAGCTGAG
GGAGCGTCGG GTAATCGTCA AGGGGCCGTG TATCCATTGT TGAACGGTCC TCATACTGGT
GTTTCGCGTG TGTTTGCTCC TGCATTTTTG TTCGCACGTC AGTTTGTTGA ACAAGCAGCA
CAAGAGATCG ATTTTGATCA TGACTGGTGT GGCGTAACTC AGTTGATGTG GGATGACAAA
TCCACAGACA AACTGGAGAA AATGCTTGCG GGTAACTTCA CTCCAGAGCT CATTCAAAAG
CTGTCCGCCG AGGAAACTGC GAACACTATC GGGTTACCTA TTGATATGGC GTCTGTGCAC
TACCCTATGG GAGGATGGTT GTGCCCTGCC GAGCTAACGC GTGGGTTAAT CAGACAATTA
GAACAGACAT CGTTACTCTC AACGAAGTTT GAACATCACG TTGAAGCATT AAATTGGGAT
GAAAAGCGTC AGCTCTGGCT ACTAACGGCG AGTGGTCAAA CATTTGAGCA CTCAACCGTT
GTGGTTGCGA ATGGCCATGA GTTCCAAACA TTGAGCCAAA CCGCTTCCCT GCCGATGGGA
CAGGTGAAAG GGCAAGTCAG TCATGCTCCG GCAACCGAAA CGCTGAGTCA ATTGAAAACG
GTATTGTGTT ACGACGGCTA CATGACGCCT GTTAACCCAA ACAATCAGCA CCTGTGCATA
GGCGCAAGCT ACGATCGCTG TCACCTAGAC TACGAATTTG ATGAAAACGC TCAGAAGGAT
AACGCAGAAA AATTAGTTAA GTGCGTACCG AACCAAGAAT GGCCAAAAGA GGTAGATATC
AGTGGCAATC GATCTCGCCA AGGTATTCGC AGCGTGAGCC GAGATCACTT ACCATTTGTC
GGAAATGTGG GTGACTTTGA GACGATAAAA ACGCAATACG CCAACTTACA AAATCAAAAA
GCAGAAGAGG TAGAAACCGT TCATCAGTTC ACTAACCTAT TCTGCTTCTT AGGTTTAGGA
TCTCGTGGGC TGAGCTCTGC ACCGTTGTTA GCTGAAGTGT TGGCCTCGCA AATCTGTGGG
GACCCGCTGC CATTACCTGT TGATGTATTG ACCGAACTTC ATCCAAGTCG AATGTGGGTT
CGTAAACTAA GAAAAGGCAA AGCCATTACT GAGCTGTAA
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| Protein sequence | MTSIKNAELG WNEAGTPVSD QFDDVYFSNV NGLEETRYVF LKQNHLPERW QEFDQRRFVI
GETGFGTGLN FLAVCQWFSE FRRQHPDATL KELHFISFEK YPLSQADLKK AHEAWPELAE
YAEKLQKHYP AAVPECHRIV LEDGAITLDL WFGDIKDCMP QVPYDEQGLI DAWFLDGFAP
SKNPEMWNQN LFNNMAKLAK QDCTVATFTA AGFVRRGLNE AGFAMKKVKG FGTKREMIAG
SMEQREKHSN HLPWFNRTAS SNLDSIAIIG GGIASAALAK TLVRRGQNVT LYCKDTQPAE
GASGNRQGAV YPLLNGPHTG VSRVFAPAFL FARQFVEQAA QEIDFDHDWC GVTQLMWDDK
STDKLEKMLA GNFTPELIQK LSAEETANTI GLPIDMASVH YPMGGWLCPA ELTRGLIRQL
EQTSLLSTKF EHHVEALNWD EKRQLWLLTA SGQTFEHSTV VVANGHEFQT LSQTASLPMG
QVKGQVSHAP ATETLSQLKT VLCYDGYMTP VNPNNQHLCI GASYDRCHLD YEFDENAQKD
NAEKLVKCVP NQEWPKEVDI SGNRSRQGIR SVSRDHLPFV GNVGDFETIK TQYANLQNQK
AEEVETVHQF TNLFCFLGLG SRGLSSAPLL AEVLASQICG DPLPLPVDVL TELHPSRMWV
RKLRKGKAIT EL
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