| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002613 |
|---|
| Symbol | |
|---|
| ID | 8556341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1121965 |
|---|
| End bp | 1124100 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646405704 |
|---|
| Product | polyribonucleotide nucleotidyltransferase |
|---|
| Protein accession | YP_003285240 |
|---|
| Protein GI | 262393386 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAAA AACCAGTTGT TAAAACGTTC CAGTACGGTA ACCACACAGT TACTTTAGAA
ACTGGCGTTA TTGCACGTCA AGCTACAGCA GCAGTTATGG TCACAATGGA TGATACGTCT
GTATTCGTAT CTGTTGTAGG TAAAAAAGAA GCCGTTGCAG GTCAAGACTT CTTCCCACTA
ACGGTTAACT ACCAAGAGCG TACTTACGCT GCGGGTAAAA TCCCAGGCGG TTTCTTCAAG
CGTGAAGGTC GTCCTTCTGA AGGCGAAACG CTAACAGCTC GTCTAATCGA CCGTCCAATC
CGTCCGCTAT TCCCAGACGC GTTTAAAAAC GAAGTTCAGG TTATCGCGAC AGTAATGTCT
GTAAACCCAG ATGTTCAGCC AGATATCGTT ACAATGATCG GTACTTCTGC TGCTCTTGCT
ATCTCTGGCA TTCCATTCAA CGGCCCTATC GGTGCGGCGC GTGTTGGTCA TATCGATGGT
CAGCTTGTAC TTAACCCTAG CCAAACTGAA CTAGAAACTT CTAAGCTTGA TCTTGTTGTT
GCTGGTACAG AATCAGCCGT ACTGATGGTT GAATCAGAAG CGGACAACCT AACTGAAGAA
GAAATGCTAG CAGCGGTTGT TTACGGTCAT GATCAACAAC AAGTTGCTAT CAAAGCTATC
AACGAATTCA AAGCAGAAGT GGCAACTCCT GCTTGGGATT GGGTAGCTCC TGAAGAAAAC
ACAGCGCTTA AAGATAAGAT TGCTGAGCTA GCAGAAGCGA AGCTTGTTGA GGCTTACAAA
ATCACTGAGA AGATGGCTCG TTACGACCGT ATCAATGAGA TCGCTGCGGA AGTAAATGAA
GTTCTTCTTG CTGAAGATCC TGAAGCGGAT ACAAAAGAAA TCCACACTAT CTTCCATGAT
CTAGAGAAAA CAGTTGTACG TCGTAGCATT ATCGCGGGTA ACCCTCGTAT TGATGGCCGT
GAAAAAGACA TGGTTCGTGC ACTAGATGTA CGCACTGGTG TTCTTCCTCG CACACACGGT
AGCGCACTAT TCACTCGTGG TGAAACTCAG GCTATCGTGA CGGCAACTCT AGGTACTCAG
CGTGATGCTC AAATCATTGA TGAGCTAACA GGCGAGCGTA AAGATCACTT CCTACTACAC
TACAACTTCC CTCCATACTG TGTAGGTGAG ACTGGTTTTG TAGGTTCTCC TAAGCGTCGT
GAAATCGGCC ATGGTAAACT GGCTAAACGT GGTATCGCAG CAGTAATGCC ATCAGTAGAT
GAGTTCCCAT ACACAGTACG TGTTGTATCG GAAATCACTG AATCTAACGG TTCTTCTTCA
ATGGCTTCTG TATGTGGTAC TTCTCTTGCT CTTATGGATG CAGGTGTGCC AATCAAGTCT
TCTGTTGCGG GTATCGCAAT GGGTCTTGTT AAAGAAGGCG ACGACTTCGT TGTTCTTTCT
GACATCCTTG GTGACGAAGA CCACCTAGGT GACATGGACT TTAAAGTAGC GGGTACTAAC
ACTGGTATCA CAGCACTTCA AATGGACATC AAGATCGAAG GTATCACTAA AGAGATCATG
CAAATTGCGC TTAACCAAGC TCAAGGTGCA CGTAAGCACA TCCTATCTGT AATGGATGAA
GCTATCTCTG GTGCTCGTGA AGACATCTCT GAATTTGCTC CTCGTATTCA CACAATGAAG
ATCAGCGCAG AGAAGATCAA AGACGTTATC GGTAAAGGTG GTGCAGTTAT CCGTGCTCTA
ACTGAAGAGA CTGGTACAAC TATCGAAATC GAAGACGACG GTACTATCAA GATTGCTGCA
ACTGAAGGCA CTGCTGCGAA AGAAGCTATC CGCCGTATCG AAGAGATCAC TGCTGAAGTT
GAAGTTGGCC GTATCTACAC GGGTAAAGTT GCACGTCTAG CTGACTTCGG TGCATTCGTA
ACGGTTCTTC CAGGCAAAGA TGGTCTTGTA CACATTTCTC AAATCGCAGA AAAACGCGTT
GAGAAAGTGT CTGACTACCT AGCTGAAGGC CAAGAAGTTC AAGTTAAAGT TCTTGAAATC
GACCGCCAAG GCCGTGTACG TCTAAGCATG AAAGAAGCGG TAGAAAAGCC AGCTGAAGAA
GCTGCTGCTG AAGCACCAGC TGCGAAAGAC GAGTAA
|
|---|
| Protein sequence | MFEKPVVKTF QYGNHTVTLE TGVIARQATA AVMVTMDDTS VFVSVVGKKE AVAGQDFFPL
TVNYQERTYA AGKIPGGFFK REGRPSEGET LTARLIDRPI RPLFPDAFKN EVQVIATVMS
VNPDVQPDIV TMIGTSAALA ISGIPFNGPI GAARVGHIDG QLVLNPSQTE LETSKLDLVV
AGTESAVLMV ESEADNLTEE EMLAAVVYGH DQQQVAIKAI NEFKAEVATP AWDWVAPEEN
TALKDKIAEL AEAKLVEAYK ITEKMARYDR INEIAAEVNE VLLAEDPEAD TKEIHTIFHD
LEKTVVRRSI IAGNPRIDGR EKDMVRALDV RTGVLPRTHG SALFTRGETQ AIVTATLGTQ
RDAQIIDELT GERKDHFLLH YNFPPYCVGE TGFVGSPKRR EIGHGKLAKR GIAAVMPSVD
EFPYTVRVVS EITESNGSSS MASVCGTSLA LMDAGVPIKS SVAGIAMGLV KEGDDFVVLS
DILGDEDHLG DMDFKVAGTN TGITALQMDI KIEGITKEIM QIALNQAQGA RKHILSVMDE
AISGAREDIS EFAPRIHTMK ISAEKIKDVI GKGGAVIRAL TEETGTTIEI EDDGTIKIAA
TEGTAAKEAI RRIEEITAEV EVGRIYTGKV ARLADFGAFV TVLPGKDGLV HISQIAEKRV
EKVSDYLAEG QEVQVKVLEI DRQGRVRLSM KEAVEKPAEE AAAEAPAAKD E
|
|---|
| |