| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002579 |
|---|
| Symbol | |
|---|
| ID | 8556305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 1077367 |
|---|
| End bp | 1079286 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646405668 |
|---|
| Product | beta-hexosaminidase |
|---|
| Protein accession | YP_003285206 |
|---|
| Protein GI | 262393352 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3525] N-acetyl-beta-hexosaminidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATATC GTGTTGATCT CGTCGTCCTA TCAGAGCAAA AGCAAAACTG CCGTTTCGGA
CTGACTTTCC ATAATTTGAG CGATCAAGAT CTCCACAATT GGAGCCTGAT TTTTGCTTTT
GATCGCTACA TTCTGCCGGA TAGTATTTCG AATGGCCAGC TCAAGCAAAT TGGCAGCTAC
TGCACCCTCA AACCAGAAGG GTTGGTGTTG GCAGCTAACC ATCATTTTTA CTGCGAGTTC
AGTATTGGTT CGAACCCATT CCGTTACTAT TCTGATGGAT TCAATGAAGC CTTGGTCAAC
TTTGAAGTCA ACGGCAACCT TCAACGAGCT CCAGTCGATG TCACGCCGAT CGTATTGGCT
TCACCGTACC GTGAACGTAG TGAGATCCCT TCCAGCTTGA CGCATGCACA GCCTTTATTG
CCAAAACCAA ACCATATAGA AGTCAGCGAT CACTGCTTTA GCTTTAATCA TCAAGCTGGC
GTTGCGGTTT ATTCAAACCT AGCCAATGCA GCTAAAGAGT GGTTACTTGA AGAGCTTAAG
CGCATTCATC AATTTGAGTT CGCATCAGAC AATGGCAGTC AGATCATCTT CAAAGGCAAC
CCAACCTTGG ATGAAGGCGC TTACAAGCTG AAGGTAGCAG AAGAGTCGAT CAAAATTGAA
GCAGGCTCTT CGTCTGGTTT TACCCATGCT TGTGCAACGT TATTGCAACT AATCAAAGTT
GGCGATCAAC CAGCCTCAAT GGAAGTGGTT TGCTGTTCGA TCAAAGACCG ACCACGTTTT
CGTTACCGCG GTATGATGCT AGATTGTGCT CGCCATTTTC ACTCCGTTGA GCAAGTCAAA
CGTTTGATCA ACCAGTTGGC TCACTACAAG TTCAATACAT TCCATTGGCA CCTTACCGAT
GATGAAGGTT GGCGAATTGA GATCAAATCA TTGCCTCAAC TAACCGATAT TGGCGCATGG
CGTGGGTTGG ATGAAACCAA TGAGCCACAG TACACGCACC TTGCTGAGCG TTACGGCGGT
TTTTACACTC AAGAAGACAT CAAAGACGTG GTTGCCTTTG CTTCGAAACG AGGCATCACT
GTTATCCCTG AAATCGATGT ACCAGGCCAC TGCCGAGCTG CCATCAAGTC GTTACCACAC
CTATTGGTAG AAACAGAAGA TACCACCGAA TACCGCAGTA TTCAGCATTA CAACGACAAC
GTCATTAACC CAGCTCTGCC GGGGAGCTAT GAGTTTATCG ATAAAGTGTT GGAAGAAGTA
TCCGCGTTGT TCCCAGCCCC TTATGTTCAT ATCGGTGCGG ATGAAGTACC TAACGGCGTA
TGGTCAAAAA GCCCTGCATG CCAAGCACTA ATGGAACAAC TGGGTTACAG CGACTACAAA
GAGTTACAAG GGCACTTCTT GCGTCATGCC GAAGACAAAC TGCGCAAACT TGGCAAGCGC
ATGCTGGGTT GGGAAGAAGC ACAGCATGGC GACAAAGTCA GCAAAGACAC AGTGATCTAT
TCGTGGTTAA GCGAAGAAGC GGCGTTGAAC TGCGCGCGCC AAGGTTTCGA TGTGGTGCTA
CAACCTGCAC AAACCACCTA CCTAGATATG ACCCAAGATT ACGCACCAGA AGAACCGGGC
GTGGATTGGG CTAACCCGTT GCCGCTAGAA AAAGCTTACA ACTATGAACC ACTCGCTGAA
GTGCCAGCCG ACGATCCAAT ACGTAAACGC ATTTGGGGCA TTCAAACAGC ATTGTGGTGT
GAAATCATCA ACAACCAGTC TCGTATGGAC TACATGGTCT TCCCGCGCTT AACCGCAATG
GCAGAAGCAT GTTGGACAGA CAAACAACAC CGAGATTGGA CCGACTATTT ATCACGTTTG
AAAGGACACC TACCGCTGCT TGATTTGCAG GGAGTGAATT ACCGTAAACC GTGGAAGTAA
|
|---|
| Protein sequence | MEYRVDLVVL SEQKQNCRFG LTFHNLSDQD LHNWSLIFAF DRYILPDSIS NGQLKQIGSY
CTLKPEGLVL AANHHFYCEF SIGSNPFRYY SDGFNEALVN FEVNGNLQRA PVDVTPIVLA
SPYRERSEIP SSLTHAQPLL PKPNHIEVSD HCFSFNHQAG VAVYSNLANA AKEWLLEELK
RIHQFEFASD NGSQIIFKGN PTLDEGAYKL KVAEESIKIE AGSSSGFTHA CATLLQLIKV
GDQPASMEVV CCSIKDRPRF RYRGMMLDCA RHFHSVEQVK RLINQLAHYK FNTFHWHLTD
DEGWRIEIKS LPQLTDIGAW RGLDETNEPQ YTHLAERYGG FYTQEDIKDV VAFASKRGIT
VIPEIDVPGH CRAAIKSLPH LLVETEDTTE YRSIQHYNDN VINPALPGSY EFIDKVLEEV
SALFPAPYVH IGADEVPNGV WSKSPACQAL MEQLGYSDYK ELQGHFLRHA EDKLRKLGKR
MLGWEEAQHG DKVSKDTVIY SWLSEEAALN CARQGFDVVL QPAQTTYLDM TQDYAPEEPG
VDWANPLPLE KAYNYEPLAE VPADDPIRKR IWGIQTALWC EIINNQSRMD YMVFPRLTAM
AEACWTDKQH RDWTDYLSRL KGHLPLLDLQ GVNYRKPWK
|
|---|
| |