Gene VEA_002537 details

Gene Information

• Locus tag: VEA_002537
• ID: 8556263
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 1025767
• End bp: 1026315
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 646405626
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_003285164
• Protein GI: 262393310
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00116484
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGATGA AAGGTAAAGA AACAATGAGC AACGAAAAGA TTGTTGTAGG CAAGTTTGGT 
GCTACTTACG GCATTCGAGG TTGGCTTAAG GTTTTTTCCT ACACAGACAA TGCTGAAAGC 
ATTTTCGATT ACAGCCCTTG GTATATTAAC CAAAAGGGCA AGTGGGTTGA GTACAAAGTA 
GAAAGCTGGA AGCGCCATAA CAAAGGTATG GTGGCTAAGC TGGAAGGCAT GGATGTTCGT 
GAAGACGCGC ATCTAATGAC GAACTTTGAA ATTGCTATTG ACCCTGCGGT ACTTCCTGAA 
TTGTCAGAAG ATGAGTTCTA CTGGCGCGAA TTGTTTGGGA TGCAAGTTGT AACCACTAAA 
GGTTACGATC TAGGTGTCGT TACTGACATG CTAGAAACTG GCTCAAACGA TGTTCTGGTT 
GTTAAAGCAA ATCTTAAAGA TGCTTTCGGG CAGAAGGAAC GATTAATCCC GTTCCTTGAA 
GAGCAAGTGA TCATTAATGT TGATCGCGAA GCTCAACGGA TCGAAGTTGA CTGGGATCCT 
GGATTCTAA 

 

Protein sequence

MSMKGKETMS NEKIVVGKFG ATYGIRGWLK VFSYTDNAES IFDYSPWYIN QKGKWVEYKV 
ESWKRHNKGM VAKLEGMDVR EDAHLMTNFE IAIDPAVLPE LSEDEFYWRE LFGMQVVTTK 
GYDLGVVTDM LETGSNDVLV VKANLKDAFG QKERLIPFLE EQVIINVDRE AQRIEVDWDP 
GF