Gene VEA_002491 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002491 
Symbol 
ID8556207 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp972571 
End bp973149 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content45% 
IMG OID646405570 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_003285118 
Protein GI262393264 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.012541 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAGC AGCTGACCGA TCAAGTATTG ATTGAGCGAG TTCAGAATGG CGATAAGCAA 
GCATTCAACC TGCTGGTAAC GAAGTACCAG AACAAGGTAT GTAATCTTAT TTCCAGATAC
GTTAGTAATC CTGGCGATGT ACCAGATGTA GCACAAGAAG CGTTTATTAA AGCTTACCGA
GCTATTCCCA GCTTTCGTGG GGAGAGTGCG TTTTATACGT GGCTGTATCG CATTGCAGTG
AATACTGCGA AAAATCACAT TGTTGCTCAA GGGCGTAGAC CTCCAGCGAC AGATGTCGAT
GCTGAAGATG CTGAATTTTA CGAAACAGGT AGTGCACTTA AAGAAATATC GAACCCTGAG
AACTTAACGT TGTCCAAAGA ATTGCAACGG GTGGTGTTCA GTGCAATCGA AGCTTTACCT
GAAGATTTAA AAACCGCAAT GACATTACGA GAGCTCGATG GCTTGAGTTA TGAAGAAATT
GCAGAAGTGA TGGATTGCCC GGTAGGAACG GTACGATCGC GTATCTTCCG TGCTCGTGAG
GCGGTGGAAA AGAAAATCAG ACCTCTTTTG CAACGCTAG
 
Protein sequence
MNEQLTDQVL IERVQNGDKQ AFNLLVTKYQ NKVCNLISRY VSNPGDVPDV AQEAFIKAYR 
AIPSFRGESA FYTWLYRIAV NTAKNHIVAQ GRRPPATDVD AEDAEFYETG SALKEISNPE
NLTLSKELQR VVFSAIEALP EDLKTAMTLR ELDGLSYEEI AEVMDCPVGT VRSRIFRARE
AVEKKIRPLL QR