| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002375 |
|---|
| Symbol | |
|---|
| ID | 8556070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 844175 |
|---|
| End bp | 844681 |
|---|
| Gene Length | 507 bp |
|---|
| Protein Length | 168 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646405433 |
|---|
| Product | MSHA pilin protein MshA |
|---|
| Protein accession | YP_003285002 |
|---|
| Protein GI | 262393148 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0138724 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAC AAGGTGGTTT CACCCTTATC GAATTGGTAG TGGTAATTGT AATCCTAGGT
ATTCTAGCGG TAACTGCAGC ACCACGTTTC CTTAACCTGC AATCTGATGC ACGTGAATCA
GCTCTTCAAG GTTTGAAAGG GGCTATGGAT GGTGCTGCCG GTATTGTATT TGGTAAAGCG
GCTATTGAAG GAAAAGAAGC CACATTTGGT CAAACGTTAG AAAATGGTAT CCAGACGGAC
TTTGGTTATC CAAAACCTGA TGCTAACGGC CTAGTTAAGG CAGTTTCTGG TCTGAATGAA
GATTGGGCAT GGGCATCAAC AGCAAGTGCT TCGGGTGCAG TGGGTACATT AGTTGCTACT
TTCCCAACTT CTACACTGAA AGCAGGCGGC ACTGACAATA CTGTAGATAA GATTAAAGAG
ACAGAATGTT ACGTTACTTA TACCTCTGCG TCAGGTAAAG GTATCGATGA GGGTGCTAAA
ACAACAGTAA CTGACACTAA ATGTTAA
|
|---|
| Protein sequence | MKRQGGFTLI ELVVVIVILG ILAVTAAPRF LNLQSDARES ALQGLKGAMD GAAGIVFGKA
AIEGKEATFG QTLENGIQTD FGYPKPDANG LVKAVSGLNE DWAWASTASA SGAVGTLVAT
FPTSTLKAGG TDNTVDKIKE TECYVTYTSA SGKGIDEGAK TTVTDTKC
|
|---|
| |