| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002368 |
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| Symbol | |
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| ID | 8556063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 836892 |
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| End bp | 838484 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646405426 |
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| Product | MSHA biogenesis protein MshL |
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| Protein accession | YP_003284995 |
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| Protein GI | 262393141 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTCACC GTGACCCCGT GGAAGTCAAA GAAGCACTCA ATGAATCTAT CAATCAAGCG
AACAGCCGCA CGTTAGAAGA AATTCCTTCT TCTGTCGAAG CGGACCTGAT GCCTAACTTA
GACTCGAATG TTGCTTCAGA GCAAGGCACC TCGAAGCGTT TCCGTATTCA AGCGAATGCG
GTCGATGCAC GAAGCTTTTT TGCCTCTCTA GTCAAAGGCA CTGAGTACAG CGTGGCGATT
CATCCAGCGG TACAAGGTAA TATCACCGTC AACTTGTCAG ATGTTACGTT GGATGAAGTC
CTGAACGTTG TACAGAACAT GTATGGCTAT GATGTGGTGA AGTCTGGCAA AGTTATTCAA
ATCTACCCTG CTGGTATGCG TACGGTAACC ATTCCTGTTG ATTACCTCCA GTTCAAACGC
TCTGGTCGAT CATTGACGAG CATTGTCACG GGCTCAGTGA CCTCGGCTGG TACGTCTAAT
TCTGGCGGTA GCTCAGACAG TTCTGACTCA TCAGACTCTG ACAATGGAAG TAACAACGGC
GATAGCTCGA CCACATCTAC GGGCGGTACG CGCATCGAAA CCATCACTGA AAGTGACTTC
TGGCCGATGC TGCAGCAAGC CGTTGCGAAT CTAATTGGTT CAGGCAAAGG ACAAAGCGTT
GTCGTAACAC CACAAGCTGG AGTGATTACG GTTCGAGCGT TTCCAGATGA TATTCGAGAA
GTCCGTGAGT TCTTAGGTGT ATCGCAGGAG CGCATGCAGC GTCAGGTCAT TCTTGAAGCT
AAAATTCTAG AAGTGACGTT GAATGATGGC TACCAACAAG GCATCAACTG GTCGAACTTA
TCGGCGTCAA TTGGTAACTC GGGTAGTGTC GTAGTGAACC GCCCTGCGTC GGCATTACCA
CCGTTGGATG CGATTGGCAC GCTATTGGGC GGTCAAACCA ACGTGACTAT CTCTGATGGC
AACTTCAATG CTGTGTTGAG TTTTATGTCT ACACAAGGTG ACTTGAACGT TCTTTCGAGC
CCTCGTATTA CCGCTGCCAA CAACCAAAAG TCGGTCATCA AAGTGGGTAC CGATGAGTAC
TTTGTTACCG AGCTATCGAG CAATGCAGGC AACGGTGAAA ACTCAAATGC CGTTCCAGAA
GTGGAATTAA CACCATTCTT CTCAGGTATC TCTCTCGATG TGACTCCGCA AATTGATAAC
AAAGGCAATG TGTTCCTGCA TGTTCACCCT GCGGTTATTG AAGTCTCGGA AGAAGTGAAG
AAATTGAACT TGGGCGGTGA GTTCCAAAAC ATCCAATTGC CACTGGCAAA AAGCTCTATT
CGTGAATCAG ACTCGGTTAT TCGTGCTAAA GATGGCGATG TTGTGGTTAT CGGCGGTTTG
ATGAAACAGC AAAATCGTGA GCTTGTTTCT AAAGTCCCAT TCTTGGGCGA TGTGCCCGCA
TTGGGGCATT TGTTCCGCAA CGTAAATAAC GTGACTGAGA AAACAGAATT GGTCATCTTG
CTAAAACCGA CCGTAGTTGG TGTGAACTCT TGGCAGAAAG AGCTAGAGCG CTCTCGTGAT
CTGCTGCAAG AGTGGTTCCC AGATGCGCAA TAA
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| Protein sequence | MGHRDPVEVK EALNESINQA NSRTLEEIPS SVEADLMPNL DSNVASEQGT SKRFRIQANA
VDARSFFASL VKGTEYSVAI HPAVQGNITV NLSDVTLDEV LNVVQNMYGY DVVKSGKVIQ
IYPAGMRTVT IPVDYLQFKR SGRSLTSIVT GSVTSAGTSN SGGSSDSSDS SDSDNGSNNG
DSSTTSTGGT RIETITESDF WPMLQQAVAN LIGSGKGQSV VVTPQAGVIT VRAFPDDIRE
VREFLGVSQE RMQRQVILEA KILEVTLNDG YQQGINWSNL SASIGNSGSV VVNRPASALP
PLDAIGTLLG GQTNVTISDG NFNAVLSFMS TQGDLNVLSS PRITAANNQK SVIKVGTDEY
FVTELSSNAG NGENSNAVPE VELTPFFSGI SLDVTPQIDN KGNVFLHVHP AVIEVSEEVK
KLNLGGEFQN IQLPLAKSSI RESDSVIRAK DGDVVVIGGL MKQQNRELVS KVPFLGDVPA
LGHLFRNVNN VTEKTELVIL LKPTVVGVNS WQKELERSRD LLQEWFPDAQ
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