Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002189 |
Symbol | |
ID | 8555852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 618177 |
End bp | 620312 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646405216 |
Product | lysine decarboxylase |
Protein accession | YP_003284817 |
Protein GI | 262392963 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000318347 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTT TCGCTATCTT GAACCACATG GGTGTGTTCT TTAAAGAAGA GCCAGTTCGT CAACTTCACG CTGCTCTTGA GAAAGCGGGC TACGAAGTGG TTTACCCAGT AGATGATAAA GACTTGATCA AAATGATTGA GATGAACCCA CGCATTTGCG GTGTGCTGTT CGACTGGGAT AAATACTCAC TAGAGCTATG TGAACGTATT AGCCAAATCA ACGAAAAACT GCCTGTTCAC GCATTTGCTA ACGAACAGTC TACTCTAGAC ATTTCACTAA CAGACCTACG TCTAAACGTG AGCTTCTTCG AGTACGCTTT AGGTATGGCT GACGACATCG CTATCAAAAT CAACCAAGCG ACTGAGGCAT ACAAAGATGC CATCATGCCT CCATTCACTA AAGCGTTATT CAAATACGTA GAAGAAGGTA AATACACCTT CTGTACTCCA GGTCACATGG GCGGTACTGC ATTCCAGAAA AGCCCTGCTG GTAGCATCTT CTACGATTTT TACGGTCCAA ACACATTTAA AGCGGACGTA TCAATCTCAA TGCCTGAGCT AGGTTCTCTA CTAGACCACT CAGGTCCACA TAAAGATGCA GAAGAATACA TCGCACGCAC ATTCAATGCA GACAGCTCGT ACATCGTAAC GAACGGTACG TCTACATCGA ACAAAATTGT TGGCATGTAC TCAGCACCTG CGGGCAGCAC AGTACTGATT GACCGTAACT GTCACAAATC TCTGACTCAC CTAATGATGA TGAGCGACGT GACACCAATC TACTTCCGCC CAACTCGTAA CGCATACGGC ATCCTTGGTG GTATTCCACA AAGCGAATTC AGCCGAGATG TCATTGCAGA GAAAGTGGCG AAAACACCAG GTGCAACAGC GCCAAGTTAC GCAGTAGTGA CTAACTCAAC TTACGATGGC TTGTTGTACA ACACACAATT CATCAAAGAG TCGCTAGACT GTAAACACAT CCACTTCGAC AGTGCTTGGG TGCCTTACAC TAACTTCAAC CCAATTTACG AAGGTAAATG TGGTATGAGT GGTGAAGCGA TGCCAGGCAA AGTGTTCTAC GAAACACAAT CAACACACAA ACTGTTGGCA GCGTTCTCAC AAGCTTCAAT GATTCACGTG AAAGGTGACT TTGATAAAGA GTCTTTCAAC GAAGCATTCA TGATGCACAC TTCAACTTCA CCTCAGTACG GCATTGTGGC TTCTACTGAA ACTGCAGCGG CAATGATGCG CGGCAACACT GGTAAGAAGT TGATGCAAGA CTCTATCGAT CGCGCAATCC GCTTCCGTAA AGAGATCAAA CGCCTAGAAG CAGAAAGTGA CAGCTGGTTC TTCGATGTAT GGCAACCAGA AAACATCGAT ACCACGGAAT GTTGGAAACT AGACCCTAGC GACACATGGC ACGGCTTCAA GAACATGGAT GACAACCACA TGTATCTTGA TCCAATCAAA GTAACGCTAC TAACTCCGGG GATGAATAAA GAAGGCGAAC TAGAAGAATC AGGTATTCCT GCTTCGCTGG TGGCTAAATT CCTAGACGAG CGCGGCATCG TGGTAGAGAA AACAGGTCCA TACAACTTGT TGTTCCTATT CTCAATCGGT ATCGACAAAT CAAAAGCAAT GCAATTGCTA CGCGGTCTGA CTGAATTTAA ACGTGGGTAC GACTTGAACC TAACCATCAA GAGCTTCCTA CCTTCGCTAT ATAATGAAGA CCCAAGCTTC TATGAAGGCA TGCGCGTTCA AGAATTAGCA CAAGCGATTC ACAACCTAAC TAAGAAATAC AATCTACCAG AGCTAATGTA CAAAGCGTTC GATGTTCTTC CTGAAATGAA AGTAACACCA CACGCAGCAT GGCAAGAAGA GCTTCGCGGT AACGTAGAAG AAATCAAACT GGAAGAAATG GTTGGTCGCG TAAGTGCGAA CATGATCCTT CCTTACCCTC CAGGCGTGCC ACTAGTACTT CCTGGTGAAA TGGTGACTCA AGAGTCTCGC CCTGTGCTGG ACTTCCTAGA GATGCTTTGT GAGATCGGTG CGCATTACCC AGGTTTCGAA ACCGACATCC ACGGTCTGTA CCAACAAAAA GATGGTAGCT ACACTGTAAA AGTATTGAAG AACTAA
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Protein sequence | MNIFAILNHM GVFFKEEPVR QLHAALEKAG YEVVYPVDDK DLIKMIEMNP RICGVLFDWD KYSLELCERI SQINEKLPVH AFANEQSTLD ISLTDLRLNV SFFEYALGMA DDIAIKINQA TEAYKDAIMP PFTKALFKYV EEGKYTFCTP GHMGGTAFQK SPAGSIFYDF YGPNTFKADV SISMPELGSL LDHSGPHKDA EEYIARTFNA DSSYIVTNGT STSNKIVGMY SAPAGSTVLI DRNCHKSLTH LMMMSDVTPI YFRPTRNAYG ILGGIPQSEF SRDVIAEKVA KTPGATAPSY AVVTNSTYDG LLYNTQFIKE SLDCKHIHFD SAWVPYTNFN PIYEGKCGMS GEAMPGKVFY ETQSTHKLLA AFSQASMIHV KGDFDKESFN EAFMMHTSTS PQYGIVASTE TAAAMMRGNT GKKLMQDSID RAIRFRKEIK RLEAESDSWF FDVWQPENID TTECWKLDPS DTWHGFKNMD DNHMYLDPIK VTLLTPGMNK EGELEESGIP ASLVAKFLDE RGIVVEKTGP YNLLFLFSIG IDKSKAMQLL RGLTEFKRGY DLNLTIKSFL PSLYNEDPSF YEGMRVQELA QAIHNLTKKY NLPELMYKAF DVLPEMKVTP HAAWQEELRG NVEEIKLEEM VGRVSANMIL PYPPGVPLVL PGEMVTQESR PVLDFLEMLC EIGAHYPGFE TDIHGLYQQK DGSYTVKVLK N
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