| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002173 |
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| Symbol | |
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| ID | 8555836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 594325 |
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| End bp | 598353 |
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| Gene Length | 4029 bp |
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| Protein Length | 1342 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646405200 |
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| Product | DNA-directed RNA polymerase beta subunit |
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| Protein accession | YP_003284801 |
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| Protein GI | 262392947 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CTTATACCGA GAAAAAGCGC ATCCGTAAGG ACTTTGGTAC TCGTCCACAA
GTTTTGGACA TTCCATACCT GCTATCGATC CAGCTCGATT CGTTCGACAA ATTCATCGAA
CAGGATCCTG AAGGTCAATA CGGTCTTGAA GCCGCTTTCC GTTCTGTATT CCCGATTCAG
AGCTACAACG GCAATTCTGA GCTGCAATAC GTTAGCTACC GTCTTGGTGA GCCAGTTTTT
GACGTTAAAG AATGTCAAAT CCGCGGTGTA ACTTACTCAA AGCCACTACG TGTAAAACTA
CGCCTAGTTA TCTTTGATAA AGACGCGCCA GCAGGTACTG TAAAAGACAT TAAAGAACAA
GAAGTCTACA TGGGTGAAAT TCCACTCATG ACAGACAATG GTACCTTCGT AATTAACGGT
ACCGAGAGGG TTATCGTATC CCAGCTGCAC CGAAGCCCAG GCGTGTTCTT CGACAGCGAT
AAGGGTAAGA CCCACTCTTC AGGTAAAGTT TTATACAACG CACGTGTTAT TCCTTACCGT
GGTTCATGGC TTGATTTCGA GTTTGATCCT AAGGATAACT TGTACGTTCG TATCGACCGC
CGTCGTAAGC TACCAGCATC GATCATTCTT CGTGCACTAG GTAAGTCGAC AGAAGAAATC
CTAGATCTCT TCTTCGAGAA AGTGAACTTC GAAGTGAAAG ACCAAACTCT ATTGATGGAG
TTGGTTCCAG ATCGTCTACG TGGTGAAACT GCGTCATTCG ACATCGAAGC GAATGGTAAA
GTTTACGTTG AGCAAGGTCG TCGCGTAACA GCTCGTCATA TCCGCCAACT AGAAAAAGAT
GGTGTTGATC ACATCGAAGT ACCAGTTGAG TACATCGTAG GTAAAGTTGC ATCAAAAGAT
TACATCAATG AAGCAACTGG CGAGATCATT GTTAACGCTA ACCAGGAAAT CAGCCTGGAA
GCACTAGCGA ACCTATCTCA GGCTGGCCAC AAAGCGCTAG AAGTTCTATT TACGAACGAT
CTAGACCACG GTCCATTCAT GTCAGAAACA CTACGTATCG ACAGCACGGT TGATCGTATT
TCTGCATTGG TAGAAATCTA CCGCATGATG CGCCCTGGTG AGCCGCCAAC AAAAGAAGCT
GCAGAAGCTC TATTCGAAAG CCTATTCTTC TCTGAAGAGC GTTACGATCT ATCGACTGTT
GGTCGTATGA AGTTCAACAG CTCTATCGGC CGTGAAGATG CTCAAGAGCA AGGCACACTT
GATGAAACTG ATATCATCGA AGTGATGAAG AAGCTGATCG CGATCCGTAA CGGTAAGGGC
GAAGTGGACG ATATCGACCA CCTAGGCAAC CGTCGTATCC GTTCTGTAGG CGAAATGGCT
GAGAACCAGT TCCGTGTAGG TCTAGTACGT GTTGAGCGTG CAGTTAAAGA GCGTCTAAGC
CTAGGCGATC TTGACGCAAT CATGCCTCAA GACTTGATCA ACGCGAAGCC AATTTCTGCG
GCAGTTAAAG AATTCTTTGG CTCTTCACAG CTTTCACAGT TCATGGACCA AAACAACCCG
CTATCAGAAG TAACGCACAA GCGTCGTATT TCTGCATTGG GTCCTGGCGG TCTAACTCGT
GAACGTGCTG GCTTCGAAGT ACGTGACGTA CACGTAACGC ACTACGGTCG TCTATGTCCT
ATCGAAACGC CTGAAGGTCC AAACATCGGT CTGATCAACT CTCTATCTGC GTTTGCGCGT
TGTAACGAGT ACGGTTTCCT AGAGACACCA TACCGTCGCG TTGTAGATGG CGTAGTAACA
GACGAAGTAG ATTACCTGTC TGCAATCGAA GAAGGCCAAT TTGTTATCGC TCAGGCGAAC
GCTAAGCTAA ACGAAGATGG TACTTTTGCA GATGAGCTGA TCACAGCTCG TCAGAAAGGT
GAATCTGGTC TACACCCTCG TGAGCACGCT CAGTACATGG ACGTTGCGAC AAACCAGGTT
GTATCTATCG CTGCATCGCT TATCCCGTTC CTAGAACACG ATGATGCGAA CCGTGCATTG
ATGGGTGCGA ACATGCAACG TCAGGCAGTT CCGACACTGA AAGCTGACAA ACCGCTTGTT
GGTACTGGTA TTGAACGTAA CGTAGCAGTT GACTCAGGTG TAACTGCAGT TGCGAAACGT
GGTGGTGTAA TCCAGTCAGT AGATGCTTCT CGTATCGTTG TTAAAGTAAA CGAAGACGAG
CTAGTACCAG GTGAAGCTGG TATCGATATC TACAACCTAA CTAAATACAC ACGTTCTAAC
CAGAACACAT GTATTAACCA ACGCCCATGT GTGATGCCAG GTGAACCTGT ATCACGCGGT
GACGTGCTTG CAGATGGTCC TTCGACAGAC CTAGGTGAGC TAGCGCTTGG TCAAAACATG
CGTATCGCGT TCATGCCTTG GAACGGTTAC AACTTCGAAG ACTCGATCTT AGTATCTGAG
CGCGTAGTTC AAGAAGACCG CTTCACGACA ATCCACATTC AAGAACTTAC TTGTGTGGCG
CGTGATACTA AGCTGGGCTC TGAAGAGATC ACAGCTGATA TTCCAAACGT AGGTGAATCT
GCTCTGTCTA AACTAGACGA GTCAGGTATC GTTTACATCG GTGCTGAAGT TAAGGGTGGC
GACATCCTAG TTGGTAAAGT AACACCTAAA GGTGAAACTC AGCTAACGCC TGAAGAGAAG
CTACTACGTG CTATCTTCGG TGAAAAAGCA TCTGATGTTA AAGATACTTC ACTACGTGTA
CCTAACTCTG TATCAGGTAC GATCATCGAC GTTCAAGTCT TCACTCGCGA CGGCGTAGAG
AAAGACAAGC GTGCGCTTGA AATCGAACAG ATGCAGCTTA AAGAAGCGAA GAAAGACCTA
ACTGAAGAAT TCCAGATTCT TGAGGGTGGC CTTCTAAACC GTGTTAAAGC TGTATTGATT
GAAGGCGGTT ACTCTGAAGC GAAACTAGAC ACTACTGATC GTAAGAAGTG GCTAGAACTA
ACGCTAGAAG ATGACGCACT ACAAACTCAA CTTGAGCAAC TTGCTGAGCA GTGGGACGAG
CTAAAAGCTG ACTTCGATAA GAAGTTCGAA ACTAAGCGTC GTAAGATCAC TCAAGGTGAT
GATTTAGCAC CTGGCGTACT GAAGATCGTT AAGGTTTACC TAGCGGTTAA ACGTCGCATT
CAGCCTGGTG ATAAGATGGC GGGTCGTCAC GGTAACAAGG GTGTAATCTC TAAGATCAAC
CCTGTTGAAG ACATGCCATA CGATGAAAAA GGTCAGCCTG TAGACATCGT ACTTAACCCA
CTGGGTGTAC CTTCGCGTAT GAACATCGGT CAGATCCTAG AAGTACACTT AGGTCTGGCA
GCGAAAGGTA TCGGTGACAA GATCAACCAG ATGGTTAAAG AGCAGCAAGA ACTAGCGAAA
TTCCGCGAGT TCCTACAAAA AGTTTACGAC CTAGGCGATA CTCGCCAGAA AGTAGACATT
GCTTCTCTAT CTGATGATGA AGTACGTACT CTGATCAAGA ACTTGCGTGG CGGTCTACCA
ATCGCGACTC CTGTATTTGA TGGCGCTCCA GAAGAGTCAA TCAAAGCACT TCTTGAGCTA
GCAGATCTAC CAACATCAGG TCAGTTAACA CTGTTTGATG GTCGCACAGG TGATGCGTTT
GAGCGTCCTG TAACTGTTGG TTACATGTAC ATGCTGAAAC TGAACCACCT TGTTGATGAC
AAGATGCACG CTCGTTCAAC TGGTTCGTAC AGCCTAGTAA CTCAGCAGCC ACTAGGTGGT
AAAGCTCAGT TCGGTGGTCA GCGTTTCGGT GAGATGGAAG TATGGGCACT AGAAGCATAC
GGTGCTGCTT ACACGCTACA AGAAATGCTA ACGGTTAAGT CGGATGACGT TAACGGCCGT
ACTAAGATGT ACAAAAACAT CGTAGACGGT AACCACAGCA TGGAACCTGG CATGCCAGAA
TCGTTCAACG TACTGTTGAA AGAGATCCGC TCGCTAGGTA TCAACATCGA GCTAGAAGAC
GAAGAGTAA
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| Protein sequence | MVYSYTEKKR IRKDFGTRPQ VLDIPYLLSI QLDSFDKFIE QDPEGQYGLE AAFRSVFPIQ
SYNGNSELQY VSYRLGEPVF DVKECQIRGV TYSKPLRVKL RLVIFDKDAP AGTVKDIKEQ
EVYMGEIPLM TDNGTFVING TERVIVSQLH RSPGVFFDSD KGKTHSSGKV LYNARVIPYR
GSWLDFEFDP KDNLYVRIDR RRKLPASIIL RALGKSTEEI LDLFFEKVNF EVKDQTLLME
LVPDRLRGET ASFDIEANGK VYVEQGRRVT ARHIRQLEKD GVDHIEVPVE YIVGKVASKD
YINEATGEII VNANQEISLE ALANLSQAGH KALEVLFTND LDHGPFMSET LRIDSTVDRI
SALVEIYRMM RPGEPPTKEA AEALFESLFF SEERYDLSTV GRMKFNSSIG REDAQEQGTL
DETDIIEVMK KLIAIRNGKG EVDDIDHLGN RRIRSVGEMA ENQFRVGLVR VERAVKERLS
LGDLDAIMPQ DLINAKPISA AVKEFFGSSQ LSQFMDQNNP LSEVTHKRRI SALGPGGLTR
ERAGFEVRDV HVTHYGRLCP IETPEGPNIG LINSLSAFAR CNEYGFLETP YRRVVDGVVT
DEVDYLSAIE EGQFVIAQAN AKLNEDGTFA DELITARQKG ESGLHPREHA QYMDVATNQV
VSIAASLIPF LEHDDANRAL MGANMQRQAV PTLKADKPLV GTGIERNVAV DSGVTAVAKR
GGVIQSVDAS RIVVKVNEDE LVPGEAGIDI YNLTKYTRSN QNTCINQRPC VMPGEPVSRG
DVLADGPSTD LGELALGQNM RIAFMPWNGY NFEDSILVSE RVVQEDRFTT IHIQELTCVA
RDTKLGSEEI TADIPNVGES ALSKLDESGI VYIGAEVKGG DILVGKVTPK GETQLTPEEK
LLRAIFGEKA SDVKDTSLRV PNSVSGTIID VQVFTRDGVE KDKRALEIEQ MQLKEAKKDL
TEEFQILEGG LLNRVKAVLI EGGYSEAKLD TTDRKKWLEL TLEDDALQTQ LEQLAEQWDE
LKADFDKKFE TKRRKITQGD DLAPGVLKIV KVYLAVKRRI QPGDKMAGRH GNKGVISKIN
PVEDMPYDEK GQPVDIVLNP LGVPSRMNIG QILEVHLGLA AKGIGDKINQ MVKEQQELAK
FREFLQKVYD LGDTRQKVDI ASLSDDEVRT LIKNLRGGLP IATPVFDGAP EESIKALLEL
ADLPTSGQLT LFDGRTGDAF ERPVTVGYMY MLKLNHLVDD KMHARSTGSY SLVTQQPLGG
KAQFGGQRFG EMEVWALEAY GAAYTLQEML TVKSDDVNGR TKMYKNIVDG NHSMEPGMPE
SFNVLLKEIR SLGINIELED EE
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