Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002115 |
Symbol | |
ID | 8555770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 536812 |
End bp | 539298 |
Gene Length | 2487 bp |
Protein Length | 828 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646405134 |
Product | sensory box/GGDEF family protein |
Protein accession | YP_003284743 |
Protein GI | 262392889 |
COG category | [S] Function unknown [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain [COG3287] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAGCTT TTTCAAAACT GGTTTATGAT GTCAGTCAGT TAAATGACTT TTTAGTCACT TCTCAGTTAT CTTCAAGTAA ACAATATTTG GTGCAAATAT TGTCGACTCA ATCACGCGAC TTTACGACCA CACTTGCGGA CGCTGTTTTA TTGTTGCTGC CGAATGCTCA TGTCGTGGGG CATAGTACGC GTAATGTCAT TCTGGAGGGG GAGATATTTA CCTCTGGCTG CCTGATCAGT GTGACTGAGT TCGAACAAAC CACGCTTACT TCTGCTGTAC AAACCTACTC TTACTCCCCC GATATTGATG GTGGAGAGCT CAAACGCTCG CTTCTGTTGC AGCATAATTC GCAAGTGATC CTCAGCTTTG CTGTGCAAAT TGAACGACGT GACTATCCCT TGTTTCAAAC CTTCGCTAGT GAAGAAGTCG TGATCTCTGG AGGGTTGGCG CAGAGTATTG ATGATGGCTG TTGGGTGCTA TATCAAAACC GAGTTTACGA TAATGCCGTG GTCGCCGTAG CTTTGCACAG CGATACCTTG AAGCTATGGA CGGATGCGTA TTCGGAATGG AACCCGATTG GCATGCCACA TAAAGTCACC CATGCAAAAG GAACGCGCTT GTATTGCTTA GGTGAACAGA AAGCGTTGGA CGTATACAAG CGTTATTTGG CGGATGGCCA TGATGTGACG CTGAGTCAAC TGCTCAGCTT TCCTTTGTAT CGAGAAAGTT TGGGGCGTAA GGAAGTTTGC ACGGTAACGG AGCTACACGC TGATGGCAGT ATGAGTTTCG ACAGGCCTTG GTGTCTTGGT GACGAAGTAC AATTTTGCTA TAACCACCCC TCATTAACGC TCGAACAGGT GCGACATGGT GTGGTTGAGT TAGCCATGCA CCAACCTGAA GTCGTGATGA TTTTTAACTG CGCGTCACGG TTAGACTTTA TTGACAGCAG CGACGAAGTC CAAGCCTTCA AAGATATCGC GACGACGTTT GGTAGTTATT GTATGGGGGA ACTGCATGGC GGTATTGGAC AGCCAGAAAT TCTTCATCAC AGTCTGACGT ATTTAGCGAT GCGAGAGGGA GACGAAGTAC AAGCATTGAA CTTGCCTAAG TCGCCCGTTA GCTCCTCTAT TTCACCATTG TTTAGCTTGA TTCGAAATGC GATTGGCGAC CTCAACCATA TGAACGCGCA TATGGGGTAT CAACTCGATC GCCAAACGCG CAAGTTACAA GAAAGCTATC GGCGAGATAG TCGCACTGGA TTACAAAACC GAGTCGCGCT GCAAGAGCGG CTGAGTAGCA TCGATTTGGA TGAGCACTTG CTGACTCTAA AGCTACTTAA CTTCAGCCAT ATCAATGAAA AATACGGTTA TAGAGTAGGG GATCAGCTAC TTAAAGACCT CTCAATGCAT TTTACGAATC GACTGCGAAA GCGTTTTGGC ATGCCAACGG CTTTGCAGCT TTATAGTATT GGGGTTGGTG AGTGGGCGTT CATATTTAAA GCTGACCAAA GCAGTGAAAC CATCAAACAG CACTTTACTC GTTTTGCCGA CGCGGTAGAG CAAACTAATT TTGAGCCAAT TGGTCTGCGC GAAATAGATT ATCTTTCTAT CTCGCTGTGC GGTGGCTTAG TGAGTCGTCG AGATTTTCCA TCAGCTTCTG CGGATGAGCT ATTGCTCAAA GGCATTGAAG CGAGGCGCTC CGGTGTGCGC AGTAATACCC ATATCTGCAA TGCGAAAGAC ATCGAAGTCA GTGAGGATGT GCGTAAAGAG CAACTTGGAT GGTTGAGTTG CGTCAGTAAA GCCATTCTCA AACAGAACAT CATCACCTAT AGCCAGCCGA TAGTGCATGC GGATAGCCAT AAATTGGCAA GCCAAGAATG TTTGGTTCGC ATTTTGGAGG AGGATGGAAC GGTGATTGCG CCAGGGCGCT TCCTGCCTAT TATTTCCGAT ACGCACCTTT ATACTCGATT GAGTCGGCAC ATGATCCATT CTACGTTACA TTACATGCGA GATAAGCAAG GTGACTTTTC TATTAACTTA TCGCCGCAAG ATTTGCTTAG TGATAAAACT TTAATGCTTT TAGAGCATGA AATTTGTCAG CTCAATGACC CTAGGCGAAT TGGTTTGGAA GTGTTGGAAT CTGAGCAAAT CAAAGACTAC GGTCGAATGA TCGAAGTATG CAGTCATTTT AGAAGCTTAG GAGCGCGTAT CATTGTTGAT GATTTTGGCT CAGGCTATTC CAATATTGAT GAAATCCTAA AGCTGGAGCC GGAAGTCATA AAGCTCGATG GCAGCTTGAT CCGTGATATC GATAAAGACT TAAAGCAGCG CAAAATAGCT TCCCAGTTGG TGCGTTTATG TCAGGTGTTT AATGCGGAGA CGGTGGCGGA GTTTGTCCAC AATCGAGAGG TGTGCAAAAT CGCGCAGGAT ATGGGCGTCG ACTATCTGCA AGGCTACTAC TTGGGTGAAC CTACGCGTTT GTTTTAG
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Protein sequence | MRAFSKLVYD VSQLNDFLVT SQLSSSKQYL VQILSTQSRD FTTTLADAVL LLLPNAHVVG HSTRNVILEG EIFTSGCLIS VTEFEQTTLT SAVQTYSYSP DIDGGELKRS LLLQHNSQVI LSFAVQIERR DYPLFQTFAS EEVVISGGLA QSIDDGCWVL YQNRVYDNAV VAVALHSDTL KLWTDAYSEW NPIGMPHKVT HAKGTRLYCL GEQKALDVYK RYLADGHDVT LSQLLSFPLY RESLGRKEVC TVTELHADGS MSFDRPWCLG DEVQFCYNHP SLTLEQVRHG VVELAMHQPE VVMIFNCASR LDFIDSSDEV QAFKDIATTF GSYCMGELHG GIGQPEILHH SLTYLAMREG DEVQALNLPK SPVSSSISPL FSLIRNAIGD LNHMNAHMGY QLDRQTRKLQ ESYRRDSRTG LQNRVALQER LSSIDLDEHL LTLKLLNFSH INEKYGYRVG DQLLKDLSMH FTNRLRKRFG MPTALQLYSI GVGEWAFIFK ADQSSETIKQ HFTRFADAVE QTNFEPIGLR EIDYLSISLC GGLVSRRDFP SASADELLLK GIEARRSGVR SNTHICNAKD IEVSEDVRKE QLGWLSCVSK AILKQNIITY SQPIVHADSH KLASQECLVR ILEEDGTVIA PGRFLPIISD THLYTRLSRH MIHSTLHYMR DKQGDFSINL SPQDLLSDKT LMLLEHEICQ LNDPRRIGLE VLESEQIKDY GRMIEVCSHF RSLGARIIVD DFGSGYSNID EILKLEPEVI KLDGSLIRDI DKDLKQRKIA SQLVRLCQVF NAETVAEFVH NREVCKIAQD MGVDYLQGYY LGEPTRLF
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