Gene VEA_002115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002115 
Symbol 
ID8555770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp536812 
End bp539298 
Gene Length2487 bp 
Protein Length828 aa 
Translation table11 
GC content46% 
IMG OID646405134 
Productsensory box/GGDEF family protein 
Protein accessionYP_003284743 
Protein GI262392889 
COG category[S] Function unknown
[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain
[COG3287] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAGCTT TTTCAAAACT GGTTTATGAT GTCAGTCAGT TAAATGACTT TTTAGTCACT 
TCTCAGTTAT CTTCAAGTAA ACAATATTTG GTGCAAATAT TGTCGACTCA ATCACGCGAC
TTTACGACCA CACTTGCGGA CGCTGTTTTA TTGTTGCTGC CGAATGCTCA TGTCGTGGGG
CATAGTACGC GTAATGTCAT TCTGGAGGGG GAGATATTTA CCTCTGGCTG CCTGATCAGT
GTGACTGAGT TCGAACAAAC CACGCTTACT TCTGCTGTAC AAACCTACTC TTACTCCCCC
GATATTGATG GTGGAGAGCT CAAACGCTCG CTTCTGTTGC AGCATAATTC GCAAGTGATC
CTCAGCTTTG CTGTGCAAAT TGAACGACGT GACTATCCCT TGTTTCAAAC CTTCGCTAGT
GAAGAAGTCG TGATCTCTGG AGGGTTGGCG CAGAGTATTG ATGATGGCTG TTGGGTGCTA
TATCAAAACC GAGTTTACGA TAATGCCGTG GTCGCCGTAG CTTTGCACAG CGATACCTTG
AAGCTATGGA CGGATGCGTA TTCGGAATGG AACCCGATTG GCATGCCACA TAAAGTCACC
CATGCAAAAG GAACGCGCTT GTATTGCTTA GGTGAACAGA AAGCGTTGGA CGTATACAAG
CGTTATTTGG CGGATGGCCA TGATGTGACG CTGAGTCAAC TGCTCAGCTT TCCTTTGTAT
CGAGAAAGTT TGGGGCGTAA GGAAGTTTGC ACGGTAACGG AGCTACACGC TGATGGCAGT
ATGAGTTTCG ACAGGCCTTG GTGTCTTGGT GACGAAGTAC AATTTTGCTA TAACCACCCC
TCATTAACGC TCGAACAGGT GCGACATGGT GTGGTTGAGT TAGCCATGCA CCAACCTGAA
GTCGTGATGA TTTTTAACTG CGCGTCACGG TTAGACTTTA TTGACAGCAG CGACGAAGTC
CAAGCCTTCA AAGATATCGC GACGACGTTT GGTAGTTATT GTATGGGGGA ACTGCATGGC
GGTATTGGAC AGCCAGAAAT TCTTCATCAC AGTCTGACGT ATTTAGCGAT GCGAGAGGGA
GACGAAGTAC AAGCATTGAA CTTGCCTAAG TCGCCCGTTA GCTCCTCTAT TTCACCATTG
TTTAGCTTGA TTCGAAATGC GATTGGCGAC CTCAACCATA TGAACGCGCA TATGGGGTAT
CAACTCGATC GCCAAACGCG CAAGTTACAA GAAAGCTATC GGCGAGATAG TCGCACTGGA
TTACAAAACC GAGTCGCGCT GCAAGAGCGG CTGAGTAGCA TCGATTTGGA TGAGCACTTG
CTGACTCTAA AGCTACTTAA CTTCAGCCAT ATCAATGAAA AATACGGTTA TAGAGTAGGG
GATCAGCTAC TTAAAGACCT CTCAATGCAT TTTACGAATC GACTGCGAAA GCGTTTTGGC
ATGCCAACGG CTTTGCAGCT TTATAGTATT GGGGTTGGTG AGTGGGCGTT CATATTTAAA
GCTGACCAAA GCAGTGAAAC CATCAAACAG CACTTTACTC GTTTTGCCGA CGCGGTAGAG
CAAACTAATT TTGAGCCAAT TGGTCTGCGC GAAATAGATT ATCTTTCTAT CTCGCTGTGC
GGTGGCTTAG TGAGTCGTCG AGATTTTCCA TCAGCTTCTG CGGATGAGCT ATTGCTCAAA
GGCATTGAAG CGAGGCGCTC CGGTGTGCGC AGTAATACCC ATATCTGCAA TGCGAAAGAC
ATCGAAGTCA GTGAGGATGT GCGTAAAGAG CAACTTGGAT GGTTGAGTTG CGTCAGTAAA
GCCATTCTCA AACAGAACAT CATCACCTAT AGCCAGCCGA TAGTGCATGC GGATAGCCAT
AAATTGGCAA GCCAAGAATG TTTGGTTCGC ATTTTGGAGG AGGATGGAAC GGTGATTGCG
CCAGGGCGCT TCCTGCCTAT TATTTCCGAT ACGCACCTTT ATACTCGATT GAGTCGGCAC
ATGATCCATT CTACGTTACA TTACATGCGA GATAAGCAAG GTGACTTTTC TATTAACTTA
TCGCCGCAAG ATTTGCTTAG TGATAAAACT TTAATGCTTT TAGAGCATGA AATTTGTCAG
CTCAATGACC CTAGGCGAAT TGGTTTGGAA GTGTTGGAAT CTGAGCAAAT CAAAGACTAC
GGTCGAATGA TCGAAGTATG CAGTCATTTT AGAAGCTTAG GAGCGCGTAT CATTGTTGAT
GATTTTGGCT CAGGCTATTC CAATATTGAT GAAATCCTAA AGCTGGAGCC GGAAGTCATA
AAGCTCGATG GCAGCTTGAT CCGTGATATC GATAAAGACT TAAAGCAGCG CAAAATAGCT
TCCCAGTTGG TGCGTTTATG TCAGGTGTTT AATGCGGAGA CGGTGGCGGA GTTTGTCCAC
AATCGAGAGG TGTGCAAAAT CGCGCAGGAT ATGGGCGTCG ACTATCTGCA AGGCTACTAC
TTGGGTGAAC CTACGCGTTT GTTTTAG
 
Protein sequence
MRAFSKLVYD VSQLNDFLVT SQLSSSKQYL VQILSTQSRD FTTTLADAVL LLLPNAHVVG 
HSTRNVILEG EIFTSGCLIS VTEFEQTTLT SAVQTYSYSP DIDGGELKRS LLLQHNSQVI
LSFAVQIERR DYPLFQTFAS EEVVISGGLA QSIDDGCWVL YQNRVYDNAV VAVALHSDTL
KLWTDAYSEW NPIGMPHKVT HAKGTRLYCL GEQKALDVYK RYLADGHDVT LSQLLSFPLY
RESLGRKEVC TVTELHADGS MSFDRPWCLG DEVQFCYNHP SLTLEQVRHG VVELAMHQPE
VVMIFNCASR LDFIDSSDEV QAFKDIATTF GSYCMGELHG GIGQPEILHH SLTYLAMREG
DEVQALNLPK SPVSSSISPL FSLIRNAIGD LNHMNAHMGY QLDRQTRKLQ ESYRRDSRTG
LQNRVALQER LSSIDLDEHL LTLKLLNFSH INEKYGYRVG DQLLKDLSMH FTNRLRKRFG
MPTALQLYSI GVGEWAFIFK ADQSSETIKQ HFTRFADAVE QTNFEPIGLR EIDYLSISLC
GGLVSRRDFP SASADELLLK GIEARRSGVR SNTHICNAKD IEVSEDVRKE QLGWLSCVSK
AILKQNIITY SQPIVHADSH KLASQECLVR ILEEDGTVIA PGRFLPIISD THLYTRLSRH
MIHSTLHYMR DKQGDFSINL SPQDLLSDKT LMLLEHEICQ LNDPRRIGLE VLESEQIKDY
GRMIEVCSHF RSLGARIIVD DFGSGYSNID EILKLEPEVI KLDGSLIRDI DKDLKQRKIA
SQLVRLCQVF NAETVAEFVH NREVCKIAQD MGVDYLQGYY LGEPTRLF