| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002037 |
|---|
| Symbol | |
|---|
| ID | 8555677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 444875 |
|---|
| End bp | 446422 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646405041 |
|---|
| Product | threonine dehydratase biosynthetic |
|---|
| Protein accession | YP_003284665 |
|---|
| Protein GI | 262392811 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAT CTCAACCCGA AAAGAAAGTA AATCAAACTG GCGCAGACTA TCTGCGCCAA
ATCCTTCGCG CACCTGTTTA TGAAGTAGCA ACAGTGACGC CACTGCAAGA AATGCCTCGT
TTATCAGCAC GTATCGGGAA TAACGTACAG ATCAAGCGCG AAGATCGCCA ACCCGTGCAC
TCATTTAAAT TACGCGGTGC GTACAACATG GTGGCAAGTT TATCTGAAGC GCAGAAAGCC
GCTGGTGTCA TCGCTGCATC GGCAGGTAAC CACGCTCAAG GCATGGCACT GTCTGGCACT
AAGCTGGGAA TCAAAACCAC TATCGTGATG CCAAAGACCA CGCCGGATAT CAAAGTCGAC
GCAGTACGCA GCTTTGGTGG CAATGTGGTA CTACACGGCA GCAACTTTGA TGAAGCAAAA
GCAGAAGCCG AACGTTTGTC AGAGCAATAT GGCTATACTT TTGTGCCCCC CTTTGATCAC
CCACTGGTGA TCGCAGGTCA AGGCACCATC GGTATGGAAA TGCTGCAACA AAATGGTCAC
CTTGATTACA TCTTTGTTCC TGTCGGTGGC GGCGGTTTGG CCGCTGGTAT TGCGGTACTA
GTGAAGCAGT TAATGCCAGA AATCAAAGTC ATTGCCGTAG AGCCGGAAGA CTCATCTTGT
CTTAAAGCCG CGCTGGATGC TGGTGAACCA GTGGTACTAG ACCAAGTCAG CATGTTTGCC
GATGGCGTCG CAGTAAAACG CATTGGTGAA GAGACTTTCC GCCTGTGCCA GAAGTACATT
GATGGCCATA TTGCGGTCTC TAGTGATGAA ATCTGCGCAG CCGTAAAAGA CATCTTTGAA
GATACCCGTG CGATTGCTGA GCCTTCGGGT GCGCTTGCTC TGGCGGGGCT GAAGAAATTT
GCTGAACAGA ACAAGCTGAA AGACAAAAAC CTAGGCACGG TACTGTCTGG CGCAAACACC
AACTTCCACG GGTTACGTTA TGTGTCAGAA CGTTGCGAGC TAGGTGAAAA ACGTGAAGGT
TTATTGGCAG TGACGATCCC TGAACGCCAA GGAGCGTTCT TTGAGTTCTG TAACTTGATT
GGCGGCCGTG CAGTTACGGA GTTTAACTAT CGTTATAACG ATGACGAACT CGCTAATATC
TTTGTCGGTG TTCGTCTGCA AGGCGGTCAA GAAGAGTTGG AAAACATCAT TCACGATCTA
CGTGAAGGTG GCTATCCGGT GGTTGACCTT TCTGATGATG AAATGGCGAA GCTACACGTT
CGCTACATGA TCGGCGGGAA GCCATCGAAG CAACTCAAAG AGCGACTCTA CAGCTTTGAA
TTTCCAGAGT ACCCAGGTGC CTTGCTGAAA TTCTTAAGCA CTCTTGGTAC CCATTGGAAT
ATTAGCTTGT TCAACTACCG TAACCACGGC GCAGACTACG GACGCGTTTT ATGTGGTTTC
GAGTTAGATG AAGGAGATTT AGCTCAGTTT TCTGCGCATT TACGCGAACT TGGCTATCAA
TGCAAAGACG AAACAGACAA CCCGTCTTAC AAGTTCTTCC TGTCATAA
|
|---|
| Protein sequence | MMESQPEKKV NQTGADYLRQ ILRAPVYEVA TVTPLQEMPR LSARIGNNVQ IKREDRQPVH
SFKLRGAYNM VASLSEAQKA AGVIAASAGN HAQGMALSGT KLGIKTTIVM PKTTPDIKVD
AVRSFGGNVV LHGSNFDEAK AEAERLSEQY GYTFVPPFDH PLVIAGQGTI GMEMLQQNGH
LDYIFVPVGG GGLAAGIAVL VKQLMPEIKV IAVEPEDSSC LKAALDAGEP VVLDQVSMFA
DGVAVKRIGE ETFRLCQKYI DGHIAVSSDE ICAAVKDIFE DTRAIAEPSG ALALAGLKKF
AEQNKLKDKN LGTVLSGANT NFHGLRYVSE RCELGEKREG LLAVTIPERQ GAFFEFCNLI
GGRAVTEFNY RYNDDELANI FVGVRLQGGQ EELENIIHDL REGGYPVVDL SDDEMAKLHV
RYMIGGKPSK QLKERLYSFE FPEYPGALLK FLSTLGTHWN ISLFNYRNHG ADYGRVLCGF
ELDEGDLAQF SAHLRELGYQ CKDETDNPSY KFFLS
|
|---|
| |