| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002007 |
|---|
| Symbol | |
|---|
| ID | 8555647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 416491 |
|---|
| End bp | 417570 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646405011 |
|---|
| Product | DNA recombination and repair protein RecF |
|---|
| Protein accession | YP_003284635 |
|---|
| Protein GI | 262392781 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0003677 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTTT CTCGTCTCAT CATTCAGCAG TTTCGAAACA TTAAAGCCTG TGATATTGAG
TTATCAGCAG GCTTTAACTT TCTTATCGGG CCGAACGGCA GCGGTAAAAC CAGTGTCTTA
GAAGCGGTTT ACCTGCTCGG GCATGGCCGC TCATTCAAGA GTTCTCTCAC CGGACGAGTG
ATACAAAATG AGTGTGACGA ACTGTTTGTT CATGGTCGTT TTTTGAACTC GGATCAATTT
GAGCTACCTA TCGGCATTAA TAAGCAGCGT GATGGCTCAA CAGAGGTTAA AATAGGCGGT
CAATCTGGAC AAAAATTAGC GCAGTTGGCA CAAGTTCTGC CTCTGCAGTT GATACACCCA
GAAGGGTTTG ATTTACTGAC AGATGGCCCT AAACATCGTC GTGCGTTTAT TGACTGGGGC
GTGTTTCATA CCGAGCCCGC TTTTTATCAA GCATGGGGAA GGTTCAAGCG CCTGAACAAG
CAGCGCAACG CGTTGTTGAA AACCGCCAAT AGTTATCGTG AACTCAGTTA TTGGGATCAG
GAAATGGCAG GGTTGGCTGA AAACATCAGC CAATGGCGAG CAAGTTACAT CGAACAGATG
AAAACCGTCG CAGAAACTAT CTGTCAGACA TTTTTGCCAG AATTTGAGAT CCAATTGAAG
TATTATCGTG GCTGGGATAA AGACACCCCA TACCACGAGA TACTAGAAAA GAATTTTGAG
CGTGATCAGG CATTGGGATA CACCTTTAGT GGCCCAAACA AAGCTGATTT GCGCATTAAA
GTGAACGGAA CGCCCGTTGA AGATGTTCTG TCACGCGGTC AATTAAAACT CATGGTGTGT
GCATTGCGTG TCGCGCAAGG GCAACACCTG ACAGAGATGA CCGGTAAACA ATGCATTTAC
CTAATTGACG ACTTTGCGTC GGAATTAGAT AGCCAACGTC GCAAGCGTCT TGCTGACTGC
TTAAAAGAGA CGGGCGCACA AGTATTTGTA AGCTCTATCA CTGAAAGCCA AATCGCCGAT
ATGTTGGACG ATAACGGTAA ATTGTTTCAT GTGGAACATG GCAGGATAGA GTCAAACTAG
|
|---|
| Protein sequence | MPLSRLIIQQ FRNIKACDIE LSAGFNFLIG PNGSGKTSVL EAVYLLGHGR SFKSSLTGRV
IQNECDELFV HGRFLNSDQF ELPIGINKQR DGSTEVKIGG QSGQKLAQLA QVLPLQLIHP
EGFDLLTDGP KHRRAFIDWG VFHTEPAFYQ AWGRFKRLNK QRNALLKTAN SYRELSYWDQ
EMAGLAENIS QWRASYIEQM KTVAETICQT FLPEFEIQLK YYRGWDKDTP YHEILEKNFE
RDQALGYTFS GPNKADLRIK VNGTPVEDVL SRGQLKLMVC ALRVAQGQHL TEMTGKQCIY
LIDDFASELD SQRRKRLADC LKETGAQVFV SSITESQIAD MLDDNGKLFH VEHGRIESN
|
|---|
| |