Gene VEA_001903 details

Gene Information

• Locus tag: VEA_001903
• ID: 8555532
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: -
• Start bp: 293322
• End bp: 295151
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 646404896
• Product: GTP-binding protein TypA/BipA
• Protein accession: YP_003284531
• Protein GI: 262392677
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.00233609
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTACTC CACAGATTGA TAAATTAAGA AATATCGCGA TCATCGCGCA CGTTGACCAC 
GGTAAAACCA CGTTGGTTGA CAAGCTGCTA CAACAATCAG GCACGCTTGA GTCTCGCGGT 
GAAGCTGAAG AGCGAGTCAT GGACTCGAAC GACATCGAGA AAGAGCGCGG TATTACCATT 
CTTGCTAAAA ACACAGCAAT CGACTGGAAC GATTACCGTA TCAACATCGT AGATACTCCG 
GGACACGCGG ACTTCGGTGG CGAAGTTGAA CGTATCATGT CGATGGTAGA CTCTGTACTA 
CTTATCGTTG ACGCGGTTGA TGGTCCAATG CCTCAAACGC GTTTCGTAAC ACAAAAAGCG 
TTTGCTCATG GTCTAAAACC AATCGTTGTT ATCAACAAGA TTGACCGCCC TGGCGCACGT 
CCTGATTGGG TTATGGACCA AGTGTTCGAC CTATTCGACA ACCTAGGTGC TTCTGACGAA 
CAGTTAGACT TTAAAGTGGT TTACGCTTCT GCTCTTAACG GTTGGGCTTC TCTAGAAGAA 
GGCGAAACTG GCGAGAACAT GGAACCGCTA TTCGAAACTA TCGTTGGCGA AGTAGCTGCA 
CCAGCAGTTG ACCTAGATGG TCCACTACAG ATGCAAATCT CTCAGTTGGA TTACAGCTCT 
TACGTTGGCG TTATCGGCGT TGGCCGTGTA ACTCGTGGTA GCGTTAAGCC AAACCAGCAA 
GTAACGGTTG TTGGTGCAGA CGGCAAAACT CGCAACGGTA AAGTGGGCAC AGTAATGGGC 
TACCTAGGCC TAGAGCGTCA CGAAGTTGAG CAAGCTAACG CGGGTGATAT CATTGCAATC 
ACTGGTCTTG GCGAGCTTAA AATCTCTGAC ACTATCTGTG CACAAAACGC AGTAGAAGCA 
CTACCAGCAC TGTCTGTTGA TGAACCAACA GTAACCATGA CGTTCCAAGT AAACACGTCT 
CCATTCGCTG GTAAAGAAGG TAAGTTCGTC ACTTCACGTA ACATCCTTGA GCGTCTAGAG 
AAGGAACTGG TACACAACGT TGCACTGCGC GTTGAACAAA CAGACGATCC AGACAAATTC 
CGCGTATCAG GCCGTGGTGA GCTTCACCTG TCTATCCTGA TCGAAAACAT GCGTCGTGAA 
GGCTTCGAGC TTGCCGTATC TCGTCCAGAA GTAATCATCA AAGAAGAAGA TGGTCAGCTA 
ATGGAACCGT TTGAAACGGT AACTATCGAC GTAATGGAAG AGCACCAAGG CGGTATCATG 
GAGAATATCG GCCTACGTAA AGGTGAGCTG AAAGATATGG CTCCAGACGG TAAAGGCCGT 
GTACGTATGG ACTTCATCAT GCCATCTCGT GGTCTGATCG GCTTCCAAAC GGAATTCATG 
ACACTGACTT CTGGTTCTGG TCTTCTATAC CATACGTTTG ACCACTACGG CCCACACAAA 
GGCGGTAACA TCGGTCAGCG TATCAACGGT GTTCTGATTG CTAACGCTGC GGGTAAAGCG 
CTAACTAACG CACTGTTCAA CCTTCAAGAA CGTGGTCGTC TATTTATCGG TCACGGTGTG 
GAAGTTTACG AAGGCATGGT TATCGGTATT CACAGCCGCG ACAACGACCT AACAGTAAAC 
GCACTGAAAG GTAAGCAGCT AACCAACGTT CGTGCATCTG GTACAGATGA CGCACAGGTT 
CTAACTCCGC CAATCATCAT GACACTAGAG CAAGCGCTTG AGTTCATCGA TGACGACGAG 
CTAGTAGAAG TAACACCTGA AAGCATCCGT ATCCGTAAGA AATTCCTAAC GGAAAGCGAT 
CGTAAACGTG CTTCTCGTGG CGCGAAATAA 

 

Protein sequence

MATPQIDKLR NIAIIAHVDH GKTTLVDKLL QQSGTLESRG EAEERVMDSN DIEKERGITI 
LAKNTAIDWN DYRINIVDTP GHADFGGEVE RIMSMVDSVL LIVDAVDGPM PQTRFVTQKA 
FAHGLKPIVV INKIDRPGAR PDWVMDQVFD LFDNLGASDE QLDFKVVYAS ALNGWASLEE 
GETGENMEPL FETIVGEVAA PAVDLDGPLQ MQISQLDYSS YVGVIGVGRV TRGSVKPNQQ 
VTVVGADGKT RNGKVGTVMG YLGLERHEVE QANAGDIIAI TGLGELKISD TICAQNAVEA 
LPALSVDEPT VTMTFQVNTS PFAGKEGKFV TSRNILERLE KELVHNVALR VEQTDDPDKF 
RVSGRGELHL SILIENMRRE GFELAVSRPE VIIKEEDGQL MEPFETVTID VMEEHQGGIM 
ENIGLRKGEL KDMAPDGKGR VRMDFIMPSR GLIGFQTEFM TLTSGSGLLY HTFDHYGPHK 
GGNIGQRING VLIANAAGKA LTNALFNLQE RGRLFIGHGV EVYEGMVIGI HSRDNDLTVN 
ALKGKQLTNV RASGTDDAQV LTPPIIMTLE QALEFIDDDE LVEVTPESIR IRKKFLTESD 
RKRASRGAK