| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001892 |
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| Symbol | |
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| ID | 8555521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 280841 |
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| End bp | 282859 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646404885 |
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| Product | general secretion pathway protein D/type II secretion outermembrane pore forming protein (PulD) |
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| Protein accession | YP_003284520 |
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| Protein GI | 262392666 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACATT GGTTCAGCAA AAGTGCTTGG CTACTAGCAG GAAGTTTACT CTGCGTCCCA
GGTGCAATAG CAAACGAATT TAGTGCCAGC TTTAAAGGCA CTGATATTCA AGAATTCATC
AACATAGTGG GTCGTAATCT CGAAAAGACC ATCATTGTTG ACCCTTCAGT GCGCGGTAAA
ATCGATGTCC GCAGCTATGA CGTGCTTAAC GAAGAGCAAT ACTATAGCTT TTTCCTTAAC
GTACTCGAAG TATACGGCTA CGCCGTCGTA GAAATGGACA ACGGTGTACT TAAGGTTATC
AAAGCGAAAG ACTCAAAAAC GTCAGCAATC CCTGTATTAG GTGATGGCAG CGCGCAAGGC
GACAGCGTTA TCACTCGAGT TGTTGCGGTG CGTAATGTTT CGGTTCGTGA GTTGTCTCCT
CTACTTCGTC AACTGATTGA TAATGCTGGT GCTGGTAACG TAGTTCACTA CGATCCAGCG
AACATCATCT TAATCACAGG TCGTGCGGCG GTCGTAAATC GCTTAGCAGA AATCATTAAG
CGTGTTGACC AAGCGGGTGA TAAAGAAATT GAGCTGGTGG AACTGCGCAA TGCTTCTGCT
GCCGAAATGG TGCGTATTGT TGAAGCACTG AATAAAAGCA CCAATCAGAA GAGCACGCCT
GAGTTCCTTG AGCCTAAAAT TGTTGCCGAT GAACGCACCA ACGCGATTTT GATTTCTGGC
GATCCTAAAG TACGTGCGCG TCTGAAGCGA TTGATTCGTC AACTTGACGT TGAAATGGCG
ACCAAAGGTA ACAACCGTGT GGTTTACCTG AAGAACGCGA AAGCTGAAGA TTTGGTGGAT
GTACTAAAAG GTGTCTCCGA TAACCTACAA GCTGAAAAGC AAGTCGGCCA GAAAGCGTCA
GGTGCCCAGC GTGGTGAAGT GGTGATTGCT GCGCACGCAG CGACCAATGC CTTAGTATTA
ACGGCTCCAC CAGATATCAT GAATGCGCTA CAAGATGTTA TTGCTCAGCT TGATATTCGT
CGTGCTCAAG TCTTGATTGA GGCGCTGATC GTTGAAATGT CAGAAGGTGA CGGCATTAAC
TTAGGTGTTC AGTGGGGCTC ACTGGAAACC GGTGCGGTGA TTCAGTACGG TAACTCTGGT
GCACCGATTG GTCAGGTAAT GGTTGGTCTA GAAGAAGCAA AAGATCAAAC TCGAACTGAA
TACTACACAA ATGCGAATGG CGAACGAACG CCATATGATG TTACTGAATC TGGTGACTAT
TCTACTCTTG CATCGGCACT GAGCGGTGTT AACGGTGCTG CGATGAGCAT CGTGATGGGT
GACTGGACTG CTTTGGTCAG CGCGGTAGCG ACCGACTCCA ACTCAAACAT TCTATCTTCT
CCAAGTATCA CGGTAATGGA TAATGGTGAA GCATCATTTA TTGTTGGTGA AGAAGTGCCT
GTTATCACAG GCTCTACGGC TGGCTCAAAC AACGACAATC CATTCCAAAC GGTTGATCGT
AAAGAAGTTG GTATCAAGCT TAAGGTTGTG CCACAAATTA ACGAAGGTGA CTCTGTTCAG
TTAAATATCG AGCAAGAAGT GTCCAATGTG TTGGGGGCTA ACGGTGCGGT TGACGTTCGC
TTTGCTAAGC GTCAGCTAAA CACCTCAGTC ATGATCCAAG ATGGTCAGAT GCTGGTTCTT
GGTGGCTTGG TTGATGAACG TGCACTCGAA AGTGAGTCAA AAGTACCGCT ACTGGGTGAC
ATCCCAGTGC TTGGTCATTT GTTCAAATCA ACCAGCACGC AAACAGAAAA GCGTAACTTG
ATGGTGTTCA TCAAGCCGAC GATTATTCGT GATGGTATGA CCGCAGACGG CATTACACAG
CGCAAATACA ACTTTATTCG CGCAGAGCAG CTCTACAAAG CGGATCAAGG ATTGAAGTTG
ATGGCTGACG AGAAGATCCC AGTCATGCCG GCCTTTGGTC AGGAGCGTCA GCACCCAACC
GAGATCCAAG CGTTTATTGA TCAGATGGAA AATAACTAA
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| Protein sequence | MKHWFSKSAW LLAGSLLCVP GAIANEFSAS FKGTDIQEFI NIVGRNLEKT IIVDPSVRGK
IDVRSYDVLN EEQYYSFFLN VLEVYGYAVV EMDNGVLKVI KAKDSKTSAI PVLGDGSAQG
DSVITRVVAV RNVSVRELSP LLRQLIDNAG AGNVVHYDPA NIILITGRAA VVNRLAEIIK
RVDQAGDKEI ELVELRNASA AEMVRIVEAL NKSTNQKSTP EFLEPKIVAD ERTNAILISG
DPKVRARLKR LIRQLDVEMA TKGNNRVVYL KNAKAEDLVD VLKGVSDNLQ AEKQVGQKAS
GAQRGEVVIA AHAATNALVL TAPPDIMNAL QDVIAQLDIR RAQVLIEALI VEMSEGDGIN
LGVQWGSLET GAVIQYGNSG APIGQVMVGL EEAKDQTRTE YYTNANGERT PYDVTESGDY
STLASALSGV NGAAMSIVMG DWTALVSAVA TDSNSNILSS PSITVMDNGE ASFIVGEEVP
VITGSTAGSN NDNPFQTVDR KEVGIKLKVV PQINEGDSVQ LNIEQEVSNV LGANGAVDVR
FAKRQLNTSV MIQDGQMLVL GGLVDERALE SESKVPLLGD IPVLGHLFKS TSTQTEKRNL
MVFIKPTIIR DGMTADGITQ RKYNFIRAEQ LYKADQGLKL MADEKIPVMP AFGQERQHPT
EIQAFIDQME NN
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