Gene VEA_001686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_001686 
Symbol 
ID8555315 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand- 
Start bp84233 
End bp85225 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content46% 
IMG OID646404679 
Productthiamin ABC transporter substrate-binding component 
Protein accessionYP_003284314 
Protein GI262392460 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAACCA CTTCAAGTCT GATTGCCTTA GCTGCAATTA CTTCAACTTC AGCGTTTGCT 
GCTGAAAACC CATTAACTAT TTATACCTAC GATTCTTTTG CCGCAGATTG GGGACCAGGT 
CCTAAAATCG AGCAAGCTTT TGAAGCAAAA TGTGGCTGTG ACGTTAACTT CGTGGCGTTG 
GACGATGGTG TGTCGATCCT GAATCGTCTT CGTCTTGAAG GCGGTAATAG CAAAGCCGAC 
ATCGTGTTAG GTTTGGATAA CAATCTGATG GCAGAAGCGA AGAAAACCGG TCTGCTTACC 
GAGCACAATG TGGATACGGC TAACACAGTG TTACCAAATG GTTGGAGCGA CACGACGTTT 
GTACCGTACG ATTACGGCTA CTTCGCGTTT GTGTACAACA CAGAGAAACT GGCTAATCCG 
CCGAAAAGCA TGAAAGAGCT GGTGGAAACG CGCGACGATT TGAAAGTGAT TTATCAAGAT 
CCGCGTACGT CAACGCCGGG CCAAGGCTTG ATGCTGTGGA TGAAATCCAT CTATGGCGAC 
GATGTGACGC AAGCGTGGCA GAAGCTAGCG AGCAAAACCG TAACGGTCAC GAAAGGTTGG 
TCAGAAGCGT ATTCCATGTT CCTTAACGGC GAGTCGGACT TAGTGCTTTC TTACACTACG 
TCACCTGCGT ACCACTTAAT TGCGGAAAAC GATTCAAAGT TTGCGACGGC GAATTTTGCT 
GAAGGTCACT ACATGCAAGT TGAAGTCGCC GCTAAAGTGA AAGGGGCAAA AAATTCAGAA 
CTTGCTGATC AATTTATGAA TTTCATTTTA AGTGATGAGT TCCAGTCAGC GATGCCAACG 
GGTAACTGGA TGTACCCTGT TACTGACGTT GAGTTACCTA AAGGTTTTGA AACCTTGAGC 
GTTCCAAACA AGTCGTTGAG CTTTAGTGCT GATGAAGTGG CAAAAATGCG TAAGTCTTGG 
ATTCGTGAAT GGCAAAGCGC ACTGACGTTT TAG
 
Protein sequence
MKTTSSLIAL AAITSTSAFA AENPLTIYTY DSFAADWGPG PKIEQAFEAK CGCDVNFVAL 
DDGVSILNRL RLEGGNSKAD IVLGLDNNLM AEAKKTGLLT EHNVDTANTV LPNGWSDTTF 
VPYDYGYFAF VYNTEKLANP PKSMKELVET RDDLKVIYQD PRTSTPGQGL MLWMKSIYGD 
DVTQAWQKLA SKTVTVTKGW SEAYSMFLNG ESDLVLSYTT SPAYHLIAEN DSKFATANFA 
EGHYMQVEVA AKVKGAKNSE LADQFMNFIL SDEFQSAMPT GNWMYPVTDV ELPKGFETLS 
VPNKSLSFSA DEVAKMRKSW IREWQSALTF