| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001624 |
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| Symbol | |
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| ID | 8555252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 13802 |
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| End bp | 15664 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646404616 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_003284252 |
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| Protein GI | 262392398 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.294566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCACA ATCCGCAGTC ACAGCTAAAG TCACTTGTTA TTAAAGGCAA GGAACAAGGC
TATCTGACCT ACGCCGAAGT AAATGACCAC CTACCTGCTG AAATCGTAGA TTCAGAACAG
GTAGAAGACA TCATTCAGAT GATCAACGAC ATGGGCATTA AGGTAGTAGA AACTGCTCCT
GATGCTGATG ATTTAGCACT GAACGATGAC ACAAATATTA CCGATGAAGA TGCAGCCGAA
GCTGCAGCCG CTGCACTGTC TAGCGTAGAG AGTGAGATTG GTCGTACAAC AGACCCAGTA
CGTATGTACA TGCGTGAGAT GGGTACTGTC GAACTTCTAA CTCGCGAAGG CGAAATCGAC
ATCGCAAAAC GTATTGAAGA AGGTATTAAC CAAGTTCAAT CGTCTGTTGC TGAATACCCA
GGTACGATTC CGTACATTCT TGAGCAATTT GACAAAGTTC AAGCTGAAGA ACTGCGTCTT
ACTGACCTTA TTTCAGGTTT TGTAGACCCA GATGCTGACG ACACCGCTGC ACCAACGGCA
ACACACATCG GTTCTGAACT GACTGAATCT CAGTTAGAAG AAGAAGACGA TGAAGACGTT
GATGACGACG AAGATAGCGA TGACGATTCA GATGATTCTG AAGAAGATGT AGGTATCGAT
CCAGAGTTAG CGCTAGAGAA ATTCAACCAA CTACGCAGCA CCTATCAAAA TCTTCAATTA
GCAATCAACG AGTACGGCTA TAACAGCCCG AAAGCAACCG TTGCTAATGA AATGATGCTA
GACGTATTCC GCGAGTTTCG TCTAACGCCT AAACAGTTTG ATCACCTAGT GAATGAACTG
CGTACTGCTA TGGATCGCGT TCGTACTCAA GAACGCCTGA TCATGAAGTC TGTGGTTGAA
TACGGCAAAA TGCCGAAGAA ATCATTCATC GCGCTGTTCA CTGGTAATGA ATCAAGTGAA
GCTTGGTTGG ATGAAGTTCT TGCTTCAGAC AAGCCATACG CTGAAAAGAT CAAACGTAAC
GAAGAAGAAA TCCGTCGTTC AATCGCTAAG CTAAAAATGA TTGAAGAAGA GACTTCTCTG
AACGTACAGA ACATTAAAGA CATCAGCCGT CGTATGTCTA TCGGTGAAGC AAAAGCTCGC
CGTGCGAAGA AAGAGATGGT TGAAGCGAAC TTGCGTCTTG TAATTTCTAT CGCGAAGAAA
TACACCAACC GTGGTCTACA GTTCTTGGAT CTTATCCAGG AAGGTAACAT CGGTCTGATG
AAAGCGGTAG ATAAATTCGA ATATCGTCGT GGTTACAAGT TCTCGACTTA CGCAACGTGG
TGGATCCGTC AGGCAATCAC TCGTTCAATC GCGGACCAAG CACGTACGAT TCGTATCCCG
GTACACATGA TCGAAACGAT CAACAAGCTC AACCGTATCT CTCGTCAAAT GTTGCAAGAG
ATGGGTCGTG AGCCACTACC GGAAGAACTG GCTGAGCGCA TGCAGATGCC AGAAGACAAG
ATTCGCAAAG TTCTGAAAAT CGCTAAAGAG CCTATCTCAA TGGAGACACC AATCGGTGAC
GACGAAGATT CGCATCTAGG TGATTTTATC GAAGATACAA CGCTAGAACT GCCGCTAGAT
TCTGCAACTG CAACTAGCCT TAAAGTGGCG ACAAAAGACG TGCTTGCAGG TCTAACGCCA
CGTGAAGCGA AAGTACTTCG TATGCGCTTT GGTATTGACA TGAACACTGA CCATACTCTA
GAAGAAGTTG GTAAGCAGTT CGACGTTACT CGTGAGCGTA TCCGTCAGAT CGAAGCAAAA
GCACTACGTA AACTTCGTCA CCCAAGCCGC TCAGAGACTC TGCGCAGCTT CCTAGACGAA
TAA
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| Protein sequence | MDHNPQSQLK SLVIKGKEQG YLTYAEVNDH LPAEIVDSEQ VEDIIQMIND MGIKVVETAP
DADDLALNDD TNITDEDAAE AAAAALSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID
IAKRIEEGIN QVQSSVAEYP GTIPYILEQF DKVQAEELRL TDLISGFVDP DADDTAAPTA
THIGSELTES QLEEEDDEDV DDDEDSDDDS DDSEEDVGID PELALEKFNQ LRSTYQNLQL
AINEYGYNSP KATVANEMML DVFREFRLTP KQFDHLVNEL RTAMDRVRTQ ERLIMKSVVE
YGKMPKKSFI ALFTGNESSE AWLDEVLASD KPYAEKIKRN EEEIRRSIAK LKMIEEETSL
NVQNIKDISR RMSIGEAKAR RAKKEMVEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM
KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKL NRISRQMLQE
MGREPLPEEL AERMQMPEDK IRKVLKIAKE PISMETPIGD DEDSHLGDFI EDTTLELPLD
SATATSLKVA TKDVLAGLTP REAKVLRMRF GIDMNTDHTL EEVGKQFDVT RERIRQIEAK
ALRKLRHPSR SETLRSFLDE
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