Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbro_1485 |
Symbol | |
ID | 8550832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gordonia bronchialis DSM 43247 |
Kingdom | Bacteria |
Replicon accession | NC_013441 |
Strand | + |
Start bp | 1546916 |
End bp | 1548658 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_003272656 |
Protein GI | 262201448 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00724238 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAACTG AAAACTTCCT GGCAAAACCG TCGCGGCGAG CCCTCGACCC CGCGGTTTTC GGGATAACGG CAGTTCTCGT CATCAGCTTC GTGGTCTGGG GGCTCCTGGA CCAGGAAAGC CTCAACTCCG TCAGCCAGAA CATCCTCGAC GCCATCACCG ATAACCTCGG GTGGTTGTTC ATCCTGTCGT CCACCGGTTT CGTCATCTTC GCGATCTGGC TGGCGCTGTC CAAGTACGGA CGCATCCCAC TGGGCCGCGA CGACGACCAG CCCGAGTACC GCACGGTCAG CTGGATCGCG ATGATGTTCA GCGCCGGTAT GGGTATCGGC CTGATGTTCT TCGGCGCGTA TGAGCCGCTG TACCACTACG TCAGTGCCCC ACCGGAATTC CCCGTTCACG ACGTCCGGGC GGCGATGGCC ACCACGATGT TCCACTGGGG GTTCCATCCG TGGGCGATGT ATGCGGTGGT GGGTCTCGCG ATCGCCTACA GCACCTACCG GCTGGGTCGG ACCCAGCTGC TCAGCGCCGT CTTCGAGCCG CTACTCGGCC ATCGTGCGAA CGGTCCGGGC GGCAAGGTCA TCGACATTCT CGCCATCTTT GCGACCCTGT TCGGCACCGT CGCGTCGCTC GGCCTGGGCG CGCTGCAGAT CGGGTCGGGT CTGGACACCG TCGGCTGGGT TCATGAGCCG ACCACACCGC TGCTCGTTGC CGTCATCGCC ATCCTGACCG CTGCCTTCGT GCTGTCGGCG GTGTCCGGGA TCGCCCGGGG CATCCAGTGG CTGTCGAACA TCAACATGGT GCTCGCGATC ATCCTGGCGG TCTTCGTCTT CGTCGTCGGG CCGACGATCT TCATCCTCAA CCTGCTGCCC ACCACACTGG GCGCCTACGC CACCGACATC ACCACCTTCT CGGCCCGGTC GTCGGCCACC GTCGACGCCG CCGGGGAGAA GTGGCTCGCG GACTGGACGA TCTTCTACTG GGCGTGGTGG GTGAGCTGGA CCCCCTTCGT CGGCATGTTC CTGGCCAAGA TCAGCAAGGG CCGCACGATC CGCGAGTTCG TCGTCGGCGT GATGCTGGTG CCGACGACGG TGTCGCTGGT GTGGTTCTGC GTCTTCGGCG GCACTGCCAT CCGGGAGCAG ATGACCGGCG TGCTCGGGTT CACCTCGGAC TCCAGCAGCG ACACCGCACT CTTCGACGTC CTGGGCAACC TGCCGTTGAC CGGTGTCGCG TCGGCTCTGG TGATGTTCCT GGTCGCCATC TTCTTTGTAT CCGGGGCCGA TTCGGCGTCG CTGGTGATGG GCACGCTGTC CGAGCGCGGG GCACACGAAC CCTCGAAACT CGTGACCATC TTCTGGGGCA CCCTGACCGG CGCGGTCGCG GCGTTGCTGC TGGCCATCAG TGGCGACGAC GCCCTCGAGG GCATCAAGAA GATGGCCATC ATCGCGGCGC TGCCGTTCGT CGTGGTCATG ATCGGCATGT GTCTGTCGCT CTACCTCGAT CTGCGCCGCG ACCCGCTGAT CGTGTCGCAG CGCATCCTGC GCACCCAGGT GGACAAGCAC ATCCGGGAAC AGGCCGAGGC CATCACCACC GGCGAGTTCG AGGCGATCGA CCCGGAGACC GCCGTCCTCA TCGAAGGGCT GCAGACCGAG AACGGTTCGT CGAACGGCTC GTCGAAATCC GCCTCCGCCA CAACCGATGC GACCCACACG GAATCGGCGA CCGACCAGGC AGCGACGGAC TGA
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Protein sequence | MATENFLAKP SRRALDPAVF GITAVLVISF VVWGLLDQES LNSVSQNILD AITDNLGWLF ILSSTGFVIF AIWLALSKYG RIPLGRDDDQ PEYRTVSWIA MMFSAGMGIG LMFFGAYEPL YHYVSAPPEF PVHDVRAAMA TTMFHWGFHP WAMYAVVGLA IAYSTYRLGR TQLLSAVFEP LLGHRANGPG GKVIDILAIF ATLFGTVASL GLGALQIGSG LDTVGWVHEP TTPLLVAVIA ILTAAFVLSA VSGIARGIQW LSNINMVLAI ILAVFVFVVG PTIFILNLLP TTLGAYATDI TTFSARSSAT VDAAGEKWLA DWTIFYWAWW VSWTPFVGMF LAKISKGRTI REFVVGVMLV PTTVSLVWFC VFGGTAIREQ MTGVLGFTSD SSSDTALFDV LGNLPLTGVA SALVMFLVAI FFVSGADSAS LVMGTLSERG AHEPSKLVTI FWGTLTGAVA ALLLAISGDD ALEGIKKMAI IAALPFVVVM IGMCLSLYLD LRRDPLIVSQ RILRTQVDKH IREQAEAITT GEFEAIDPET AVLIEGLQTE NGSSNGSSKS ASATTDATHT ESATDQAATD
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