Gene Hoch_5559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5559 
Symbol 
ID8547973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp7627642 
End bp7629900 
Gene Length2259 bp 
Protein Length752 aa 
Translation table11 
GC content69% 
IMG OID646390232 
Productsignal transduction histidine kinase, nitrogen specific, NtrB 
Protein accessionYP_003269934 
Protein GI262198725 
COG category[T] Signal transduction mechanisms 
COG ID[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGGTGC CCGGCAACAT TCAGGCGATC TCGGCGCTGC TGTCGTCGAT CCTCATCGTG 
GTCATCGGCG TCTCGGTGCT GCTGCGCGAC CGCACGCAGC GCACGTACAC CTCGTTTGCC
GCGTTCACGA TCGTGCTGTC GTCGTGGCAC CTGTGCTCGT TCATCGCCAC GGTGACCGAC
AGCTCGACGG TGCGCTGGCT GGCGCTGTGG CCGGCGGCCA CCATCCCGCC GACCGCGGTG
GCGTTCTTTC GCGAGTTCCT GTCGCAGCCG TCGATCGGCG GCAAGCGCCG GCCGCCGCGC
GTGACCCTGG CATGGACCAT CCTCGCCTGC CTGGCCCTGA TCTACGCCGG CTTCATCCCC
ATCCACGAGA CCCTGTTCTT TCAGATCCCG TTCGGCGTCT ACGTGTTCGG CGGCCTGTAT
CGCTGCGTCT ACGATACGTA TAAGCAATAC CGGGCCACGG TGAAGCGGGT CGAGCGGGTG
CGCGTGCGCT ACGTGCTCAT CGGCGGCTTC CTGGCCACGA CCTTCGCGCT CATCGATGTA
TTGCCGCGCT TCGGCGTGGC CTGGCCGGCG CTCGGCAACG TCTTCACGAT TCTGTATCTG
TACTTCCTAT CGCAGTCGCT GTTTCGCTAT CAGCTCATCG ATATCAACGA GCTGATCGGC
AAGATGGCCG TGCTCGGCAC CTTGGTGGCG CTGCTGTGGG CGGTCTACGG CCTGCTGCTG
GCGTGGATCG GCCGCGGCCA AGAGGGCCTG TTCCTGCTCA ACGCGCTGGT GGCCTCGTTC
GTCATCCTGC TGCTCTACGA GCCGGTGCGC AGCCGCCTCG AGAACGGCAT CCACCGCTGG
CTGCTGCGCC AGCGCACCGA GCTGCGCGGC CGCATCGAGC GCCTGGGCCG CGAGCTTCTG
CGCGTGACCC ACGTCGACGA GATGGCCTCG CTGATCCTCA CCGCGCTCGA GGAGTCGCGC
CGGGTCACGC ACGCGGCCGT GTATCTGCTC GACTCGGCCG GCGCCGGCTA CGATCGCAAG
GGTTACTACG GCACCGCGCC GATCGAGCGC ATCGAGAGCG CCACCTACAG CACGCTGCTC
GCCCGGCTGC GCGACAGCGA TGGCCACTAC GTCGACGCCG ACGAGCTGCG CGCGGCGCAC
GAACCCGGAC GCGAGGACGG CGAAGGCGAC CGCGCGGACG AGATCCCGAG CTTCGATCCC
GACACCGTGG GCGCGCTGCG CCGCCAGCTC GAGTCGATGA ACGCGGGCGT GGTGTTTCCC
ATGTACGGCT CGGCCGCGAC CGAGCAGGGA CCGTGGCTGC TGGGTCTGCT GGTGGTGCGC
GACGCCCGCA CCGACAGCGC CTTCGACCGC GACGACCTCG ACCTGTTTCG CCAGCTCGCG
ACTCAGGCGG CGCGCACCAT CGAGGCCAGC GAGGCGTTTA CGCGGGTCAA GGAGCGCGAT
CGCCTGGCCG CCATCGGCGA GCTGAGCGCC GGCCTGGCGC ACGAGATCCG CAATCCCCTG
GGCGCGATCA AGGGCGCGGC CCAGCTCCTG GTCGGCCCCG ATGGCGAGCC CGCGCCGCCC
AGCGCCGAGT CGGTGGAGTT CGTACAGATC ATCATCGAGG AGGTCGATCG CCTCAACAAC
GTGGTCTCGC AGTTCCTCGA CTACGCGCGC GCGACCGGCA GCGACACGCA CAAGCATCGG
CCCATCTCGA TGAACGAGGT CATCGACAAG ACAGTCCAGA TCCTGCGCCG CGATGCGCCC
GACAATGTCG CCATCCGCGT CCACGTGGAC GAGCTCCTGC CGCCGGTCTC GGGCGACGCG
GCCACGCTGC TGCAGGTGTT CCTCAATCTC GGCCAGAACG CGATCCAGGC GATGGCCGAG
AGCGGCGGTG TGCTCGACAT CTTGACCACG CGCCGCCGCC GCTCGCGGCT GGGTTACGGC
TCCTTTGCCG AGGCGCGCTT CCGCGACAGC GGCGTGGGCA TCGCCAGCGA CGTGGTCGAC
AAACTCTTCA TCCCCTTCTT CACCACCCGC GAGAAGGGCA CCGGCCTGGG CCTGCCCATC
TCCGAGCGCA TCGTGAGCGA GCACGGCGGC ACCATCGAGG TGCGCGCCAA TCCCGAGGGC
GGCTCGACCT TCTCGGTGTT CCTGCCCGCG CTGGGGCCCT CACGCCCGCC GGCCGACGAG
CCCACGCCGC CGCCGCTGCC GCTGCCGTGG CCGAGGCCGA ACGCGGACGG AGACGCGGCC
AGCGAGACCG ATGGCGAACG CGGCCGGGGA AGCGAGTAA
 
Protein sequence
MAVPGNIQAI SALLSSILIV VIGVSVLLRD RTQRTYTSFA AFTIVLSSWH LCSFIATVTD 
SSTVRWLALW PAATIPPTAV AFFREFLSQP SIGGKRRPPR VTLAWTILAC LALIYAGFIP
IHETLFFQIP FGVYVFGGLY RCVYDTYKQY RATVKRVERV RVRYVLIGGF LATTFALIDV
LPRFGVAWPA LGNVFTILYL YFLSQSLFRY QLIDINELIG KMAVLGTLVA LLWAVYGLLL
AWIGRGQEGL FLLNALVASF VILLLYEPVR SRLENGIHRW LLRQRTELRG RIERLGRELL
RVTHVDEMAS LILTALEESR RVTHAAVYLL DSAGAGYDRK GYYGTAPIER IESATYSTLL
ARLRDSDGHY VDADELRAAH EPGREDGEGD RADEIPSFDP DTVGALRRQL ESMNAGVVFP
MYGSAATEQG PWLLGLLVVR DARTDSAFDR DDLDLFRQLA TQAARTIEAS EAFTRVKERD
RLAAIGELSA GLAHEIRNPL GAIKGAAQLL VGPDGEPAPP SAESVEFVQI IIEEVDRLNN
VVSQFLDYAR ATGSDTHKHR PISMNEVIDK TVQILRRDAP DNVAIRVHVD ELLPPVSGDA
ATLLQVFLNL GQNAIQAMAE SGGVLDILTT RRRRSRLGYG SFAEARFRDS GVGIASDVVD
KLFIPFFTTR EKGTGLGLPI SERIVSEHGG TIEVRANPEG GSTFSVFLPA LGPSRPPADE
PTPPPLPLPW PRPNADGDAA SETDGERGRG SE