Gene Hoch_5388 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_5388 
Symbol 
ID8547800 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp7406874 
End bp7407611 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content69% 
IMG OID646390061 
Producthypothetical protein 
Protein accessionYP_003269765 
Protein GI262198556 
COG category[S] Function unknown 
COG ID[COG2912] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.666876 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.357549 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCACTC AGTCCCCCAG CCTGACCTTG TTCGCACACG TGGCCAACCG CCCCGAGGAC 
GACATCGAGC TCGACGTCGC CGCCCTGCTG GTCGCCGAGT GGGAATACGA CAACCTCGAC
GTGAGCCGCT ACGTGGCCGC GCTCGACGAC TTCGCCGAGC GCACCCTGGA GGCCCAGCGC
GACCGCCCCG ACGCCGACTT CCCGGCCATT CGCGCGCTGC ACAGGACCCT GTTTCGCGAT
CTCGGATTCC GCGGCAACGA AGATAATTAC TACGACCCGC GCAACAGCTT CCTGCACCAG
GTGATCGAGC GCCGCACCGG CCTGCCCATC ACGCTCTCGG TGCTGTACAT CGAAGTGGCG
CGCCGCATCG GACTCGAAGT TCGCGGCGTG AGCTTTCCCG GCCACTTCCT GGTCCGCCAC
GACAGCGCCT ACGGCACCGT CATCATCGAC CCCTTCCACC TCGGCCGCAC CCTCGACAGC
GGCGAGCTCG ACGAGCTGGC CAAACGCGCC TGCGGCCCCG AGGTCGAGCT CGATCCCGAC
ATGCTGGCGC CGGCCAGCAA GCGCGATATC CTGCTGCGCA TCCTGGCCAA CCTGTCGCGC
ATCTACGAAC AGCGCGGCGA CATCGTCCGC GCCCGCGCCG CGCTCGAGCG CATGCAGGTG
CTCGACCCCA GCAGCAAGCG CATCGCGGGC AAACTCGACG CCCTGCACGC CGGACCCGGC
TCGGCCGGCC CCAACTGA
 
Protein sequence
MATQSPSLTL FAHVANRPED DIELDVAALL VAEWEYDNLD VSRYVAALDD FAERTLEAQR 
DRPDADFPAI RALHRTLFRD LGFRGNEDNY YDPRNSFLHQ VIERRTGLPI TLSVLYIEVA
RRIGLEVRGV SFPGHFLVRH DSAYGTVIID PFHLGRTLDS GELDELAKRA CGPEVELDPD
MLAPASKRDI LLRILANLSR IYEQRGDIVR ARAALERMQV LDPSSKRIAG KLDALHAGPG
SAGPN