| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_5060 |
|---|
| Symbol | |
|---|
| ID | 8547471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 6977867 |
|---|
| End bp | 6979696 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 646389736 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_003269441 |
|---|
| Protein GI | 262198232 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAGT CCGTGAACTA TTACAAAGCA GATCTTCGGG ACTATAAGTT CCTGTTGTTC
GAACAGTTTC GTATTCAAGA GATCCTCGGA AAAGGCCCCT TCGAGGACTG GGATCAGGAC
TCGGTGGAGA TGGTGATCAG CGAGGTGTAC AAGTGGTCGT GCGATGTGCT CGGGCCCCTG
CACCGCACGG GCGACGCCGG CTGCAAGCTC GAAGACGGCA AGGTGAGCAC GCCGGCCGGT
TTCAAAGCCG CCTGGAAGTC GCTGTACGAG GCCGGCTGGA ACAGCCTCTC GGTCTCCAGC
GAGTACGGTG GCCAGCAGGG CCCGACGACG CTGCACACCA TGGCCGAGGA GTTCATGAGC
GGCGCCAACA CCGCGTTCAC CATGTACCCG GGGCTCACCC TCGGCGTGGC CGAGCTGATC
GAGGCGCACG GCACCGACGA GCAGAAGCAG GCGCTGTGCG AGAAGCTCTA CGACGGCACC
TTCGGCGGCA CCATGTGCCT CACCGAGCCG CACGCGGGCT CTGACGTCGG CGCCAACACC
ACCCGGGCCA CGCCCATCGG CGACGGCAAA TACAAGATCT CGGGCACCAA GATCTACATT
ACGGGCGGTG ACCAGGACCT GAGCGAGAAC ATCATCCACA TGGTGCTGGC TCGCACCGCC
GACGCGCCCC AGGGCACCCG CGGCCTGAGC CTGTTCATCG TGCCCCGCGA TCGCCTCGAC
GGCAGCGGCT CCAACGACGT GAGCGTGGCC GGTATCGAGC ACAAGATGGG CATCAACGGC
TCGGCCACCT GCATCCTCAA CTTCGGCGAG AACGACGAGT GCATCGGCGA GCTGGTCGGC
AGCGAGGAGC AGAAGGGCAT CCGCCAGATG TTCCACCTCA TGAACCTGGC CCGCATCGGC
GTGGGTATCC AGGGTCTGGC GGTGGCCTCC TCGGCGTACC TCAACGCGCT CGAGTACGCC
AAGGATCGCA AGCAGGGCAC CGACATCGCC CAGCGCAAGG ATCCCGACGC CGAGCGCGTG
CCCATCATCC GCCACGCCGA CGTGCGCCGC ATGCTGCTCG ACATGAAGTG CCGCGTGGAG
GGTATCCGCG CGCTCTCGGT CAAGCTCACC ATGCACAACG ACCGCGCCCG GCTGGCGCTC
GAGAGCGGCG ACGAGAAGGC GGCCGCGTAC CATCACGGCC AGGTCGACCT GCTGGTGCCG
CTGCTCAAGG CCTACGCCAC CGATCAGTCC TTCCTCATCT GCGCCAACGC CATCCAGGTG
TACGGCGGCG CCGGCTACCT CAAGGATTGG CCGGTCGAGC AGTACTGCCG CGACTCCAAG
ATCTTCTCGA TCTACGAGGG CACCAACCAC ATCCAGGCGC TCGACCTGGT CGGTCGCAAG
CTGGGCCAGA AGGGCGGCAT GAACTTCCAG GCCTTTGCCA AGGACGTGCA CAAGTTCCTC
AGCGAGAACC GCGAGAACGA GGCGCTCAAG GAGGCCATGC AGAACCTCAG CAGCGCCATC
GACGCCCTCA CCGGCACGGC GATGCGCTTC TGGGGCTGGC TCAAGGCGCA CAAGATCGAC
ATGGTGCCCC TGGTCGCCAA CCGCTTCCTC GAGATGATGT CCGAGACCAC GGTCGGCTGG
CTGCTGCTCG AGGGCGCCGT CATCGCCCAG AAGGCGGCCG CCGAGCTGCC CGAGTCGCAT
CCCGACCGCG CGTACTACGA GGGCCGCAAG TTCTCGGCCC TGTACTTCGC CAATGACATC
CTGCCCGGGG TCGCGTTCAA AGCCAGCCTG ATCTCGAAAG AGCAGCGCCA GCCGATGCTG
ATCCCCGAAG AGGCCTTCGC CTCGCTGTGA
|
|---|
| Protein sequence | MAQSVNYYKA DLRDYKFLLF EQFRIQEILG KGPFEDWDQD SVEMVISEVY KWSCDVLGPL
HRTGDAGCKL EDGKVSTPAG FKAAWKSLYE AGWNSLSVSS EYGGQQGPTT LHTMAEEFMS
GANTAFTMYP GLTLGVAELI EAHGTDEQKQ ALCEKLYDGT FGGTMCLTEP HAGSDVGANT
TRATPIGDGK YKISGTKIYI TGGDQDLSEN IIHMVLARTA DAPQGTRGLS LFIVPRDRLD
GSGSNDVSVA GIEHKMGING SATCILNFGE NDECIGELVG SEEQKGIRQM FHLMNLARIG
VGIQGLAVAS SAYLNALEYA KDRKQGTDIA QRKDPDAERV PIIRHADVRR MLLDMKCRVE
GIRALSVKLT MHNDRARLAL ESGDEKAAAY HHGQVDLLVP LLKAYATDQS FLICANAIQV
YGGAGYLKDW PVEQYCRDSK IFSIYEGTNH IQALDLVGRK LGQKGGMNFQ AFAKDVHKFL
SENRENEALK EAMQNLSSAI DALTGTAMRF WGWLKAHKID MVPLVANRFL EMMSETTVGW
LLLEGAVIAQ KAAAELPESH PDRAYYEGRK FSALYFANDI LPGVAFKASL ISKEQRQPML
IPEEAFASL
|
|---|
| |