Gene Hoch_4994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHoch_4994 
Symbol 
ID8547404 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHaliangium ochraceum DSM 14365 
KingdomBacteria 
Replicon accessionNC_013440 
Strand
Start bp6886953 
End bp6889811 
Gene Length2859 bp 
Protein Length952 aa 
Translation table11 
GC content69% 
IMG OID646389670 
Product2-oxoglutarate dehydrogenase, E1 subunit 
Protein accessionYP_003269376 
Protein GI262198167 
COG category[C] Energy production and conversion 
COG ID[COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes 
TIGRFAM ID[TIGR00239] 2-oxoglutarate dehydrogenase, E1 component 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACA CCGACCGAGG CGGCAACGAC CCCCTGAACA GTTCGAGCCT TACGTTCGCC 
GAGGACCTGT ATCAGACCTA CCTCGACGAC CCGCAGGCGG TCCCGGCCGA CTGGCGGGTT
TATTTCGACC AGTTGGACGG CAAAGGCACG GGGTCGGGCA GCGGCGCCGG CGCCAACGGG
CCCAGCTTCC CGTGGCGCAG CCTGTTCCAC GGCGGCGCGC GCGCGGGCAA TGGCGCCACG
CGCGCAGGCG CGGTCGCGGC CGAGATGCCG CCGAGCGGCG ACGCCGACCT GCAGCACCGC
GTCGATATGA TGATCCGCAA CTACCGGGTG CGCGGTCACG AGGTCGCGAC CATCAACCCG
CTCGGCGGCG ATGTGCCCGA GATCCCCGAG CTGGCCACCG ACTACTACGG CTTCCGCGAG
TCGGACTTCG AGCTGCCGCT GGCGCCCAAC ACCCTGCCCG GCTGCGCCCA CCTGCGCGAT
GTGTATAACG CGCTGCGCGC CACCTATACC CGATCGATCG GCGCCGAGTA CATGCACATC
AGCAACGGCG ATGTGCGCCG CTGGCTGTCC GATCGCATGG AGCGCGGCCG CAACCGCATC
GAGCTGTCGC GCGCGACCCA GCTCAGCATC CTCACCAAGC TCACCGACGC CGAGATCTTC
GAGGAGTTCA TCCAGAAGAA GTTCGTCGGC GCCAAGCGCT TCTCGCTCGA GGGCGGCGAG
AGCCTGATCC CGCTGCTCGA CATGGCCATC GAGAAGGCGG CCAACTCCGG GGTCAAGGAG
ATCGTGCTGG GCATGGCCCA CCGCGGCCGG CTCAACGTGC TGGCCAACAT CATGGGCAAG
AACCCGCGCA CCATCTTCCG CGAGTTCGAG GACAAGAACC CCGAGCGCCA CTTCGGCTCG
GGCGACGTCA AGTATCACCT CGGCTACAGC GCCGAGTGGG TGTCGGCCGA GAACCACGCC
CTGCACATGT CGCTGGCCTT CAACCCCTCG CACCTCGAGT TCGTCAACCC GGTGGTGATG
GGCCGCGTGC GCGCCAAGCA GGACCGCTTC GGCGACACCG ATCGCACCTG CGGGCTGGCC
ATCCTCATCC ACGGCGACGC CGCCTTCATC GGCGAGGGCG TGGTGCAGGA GACGCTGAAC
ATGTCGGAGC TCGACGGTTA CGCCGTCGGC GGCACCCTGC ACGTCATCGT CAACAATCAG
CTCGGCTTCA CCACCGGCTC CGACCAGAGC CGCAGCACGG TGTACGCCAG CGACATCGCC
AAGATGCTGC AGAGTCCGAT CTTCCACGTC AACGGCGAGG ATCCCGAGGC CGTGGCGCAG
ACCATCGAGC TGGCCATGGA CTTCCGCGCC GAGTTTGGCC GCGACGTGGT CATCGACATG
TACTGCTACC GCCGCCACGG CCACAACGAG GGCGACGAGC CGGCCTTCAC CCAGCCGCTG
ATGTACAGCG AGATCCGCCA GCGCCCGACC GTGCGCGAGA GCTACATCGA GCACCTGCTC
AAGCTGGGCG AGATCACGGG TGACGAGGCC ACCGAAATCG CCGACGCGCG TCGCGCGCAC
CTCGAGGACG AGCTGTCGGT GGCCCGCAGC GAGGACTTCC AGCCCCACTA CTCGGCCGGC
GAAGGCATCT GGCAGCCCTA CCACGGCGGC GCCGACGTGC GCACCGACGA TGTCGAGACC
GGCATCCACG AGGACGACGC GCGCTCGCTG CTGCAGCGGC TCACCGAGGT GCCCGAGGAG
TTCCACCAGC ACCCCAAGAT CACGCGCGGG CTCAAGCAGC GCCGGGCCAT GGCCGAGGGC
GAGCATCCGC TCGACTGGTC GGCGGCCGAG GCCCTGGCCC TGGCCAGCCT GCTCACCACC
GGCACGCGCG TGCGCATGAC CGGACAGGAC GCCGAGCGCG GAACCTTCAG CCAGCGCCAC
GCGGTGCTGC ACGACGTCAA CAGCGACGCG CGCTTCATGC CGCTGGCGCA TCTGGCGCCC
GATCAGGCGC CGATCGAGAT CCACAACAGC CCGCTGTCCG AGGCCGGCGT GCTCGGCTTC
GAGTACGGCT ACAGCCTCGA CACCCCGGAC GGGCTGGTGC TGTGGGAGGC CCAGTACGGC
GACTTCGTCA ACGCCGCCCA GGTCATCATC GACCAGTTCA TCTCCTCGGC CGAGGACAAG
TGGAACCGGC TCTCGGGCCT GGTCATGCTG CTGCCGCACG GCTTCGAGGG CAGCGGCCCC
GAGCACTCCA GCGCGCGGCT CGAGCGCTTC TTGCAGCTGT GCGCCGAGGA CAACATCCAG
GTCGCCAACC CGAGCACGCC GAGCCAGTAC TTCCACCTGC TGCGCCGCCA GGTGCGGCGC
CCGGCGCGCA AGCCGCTGGT GGTGATGACG CCCAAGAGCT TGCTGCGCCA TCACAAGGCG
CAGTCGCCGC TGTCCGAATT CACCGACGGC CGCTTCGAGC GCGTCCTGGC CGACGAGCTT
GAGCCCGCTC GCGTCAAGCA CGTCCTGCTG TGTTCGGGGA AGGTGTACTA CGATCTGCTG
GCCGAGCGCG ACGCCGAGGA GCGCAAGGAC GTGGCCATCA TTCGCCTCGA GCAGCTCTAC
CCGCTGGCCA TGGAGGAGCT CGAGCGCGTG CTCTCGCCCT ACGCCGCCGG CACGCCCGTG
TACTGGGTGC AGGAAGAGCC GGCCAACATG GGCGCGTGGT GGTTTCTGCG GGTGCAGTGG
GGCAGCCAGG TCCTCGGCCA TCCCTTCTCC GGCATCAGCC GCCGCGCCTC GGCCAGCCCG
GCCACCGGCT CGGGCACCAG CCACAAACTC GAGCAGACCG CTCTGGTCCG CGCGGCCATC
CTCGGCGCCG AGAGCTCGCT GGTGACGACC ACCAGCTAA
 
Protein sequence
MSDTDRGGND PLNSSSLTFA EDLYQTYLDD PQAVPADWRV YFDQLDGKGT GSGSGAGANG 
PSFPWRSLFH GGARAGNGAT RAGAVAAEMP PSGDADLQHR VDMMIRNYRV RGHEVATINP
LGGDVPEIPE LATDYYGFRE SDFELPLAPN TLPGCAHLRD VYNALRATYT RSIGAEYMHI
SNGDVRRWLS DRMERGRNRI ELSRATQLSI LTKLTDAEIF EEFIQKKFVG AKRFSLEGGE
SLIPLLDMAI EKAANSGVKE IVLGMAHRGR LNVLANIMGK NPRTIFREFE DKNPERHFGS
GDVKYHLGYS AEWVSAENHA LHMSLAFNPS HLEFVNPVVM GRVRAKQDRF GDTDRTCGLA
ILIHGDAAFI GEGVVQETLN MSELDGYAVG GTLHVIVNNQ LGFTTGSDQS RSTVYASDIA
KMLQSPIFHV NGEDPEAVAQ TIELAMDFRA EFGRDVVIDM YCYRRHGHNE GDEPAFTQPL
MYSEIRQRPT VRESYIEHLL KLGEITGDEA TEIADARRAH LEDELSVARS EDFQPHYSAG
EGIWQPYHGG ADVRTDDVET GIHEDDARSL LQRLTEVPEE FHQHPKITRG LKQRRAMAEG
EHPLDWSAAE ALALASLLTT GTRVRMTGQD AERGTFSQRH AVLHDVNSDA RFMPLAHLAP
DQAPIEIHNS PLSEAGVLGF EYGYSLDTPD GLVLWEAQYG DFVNAAQVII DQFISSAEDK
WNRLSGLVML LPHGFEGSGP EHSSARLERF LQLCAEDNIQ VANPSTPSQY FHLLRRQVRR
PARKPLVVMT PKSLLRHHKA QSPLSEFTDG RFERVLADEL EPARVKHVLL CSGKVYYDLL
AERDAEERKD VAIIRLEQLY PLAMEELERV LSPYAAGTPV YWVQEEPANM GAWWFLRVQW
GSQVLGHPFS GISRRASASP ATGSGTSHKL EQTALVRAAI LGAESSLVTT TS