| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_4015 |
|---|
| Symbol | |
|---|
| ID | 8546411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5509790 |
|---|
| End bp | 5513956 |
|---|
| Gene Length | 4167 bp |
|---|
| Protein Length | 1388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 646388687 |
|---|
| Product | DNA-directed RNA polymerase, beta' subunit |
|---|
| Protein accession | YP_003268407 |
|---|
| Protein GI | 262197198 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00534047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.454006 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGACA TCTTCAACTT CTTCGAGAAG CCCAAGGATC CGCGCACATT CAGCGCGATC
CGCATCATGC TCGCATCCCC GGAAAAGATC CGGGTCTGGT CCCACGGTGA GGTCAAGAAA
CCCGAGACCA TCAACTATCG AACCTTCAAG CCGGAGCGCG ACGGCTTGTT CTGCGCCAAG
ATCTTTGGCC CGGTCAAAGA CTACGAGTGC AACTGCGGCA AGTACAAGCG CATGAAGCAC
CGCGGCGTGG TGTGCGAGAA GTGCGGCGTC GAGGTCATCC AGTCCAAGGT GCGCCGCGAG
CGCATGGGCC ACATCACCCT GGCCACGCCG GTCGCGCACA TCTGGTTTCT CAAGTCGCTG
CCGAGCCGCA TCGGCAACCT GCTCGACATC CCGCTCAAGG ATCTCGAGAA GGTGCTGTAC
TGCGAGTCGT ACATCGTCAT CGACCCGCGC GAGTCGGGGC TCGAGCGCTG TGAGCTGCTC
AGCGAGGAGC GCTACGGCAA GCTGCTCGAC GAGGTCGGCT ACGACGCCTT CACCGCCGGC
ATGGGCGCCG AGGCCATCCT GCAGATCTTG CGCGACCTCG ACGTGCACGC GCTCGCCGAG
CAGCTTCGCA TCGAGATGAA GGAGGTCACC TCCGAGGCCA AGCGCAAGAA GATCGCCAAG
CGCCTCAAGG TGGTCGAGGC CTTCCGCGAG TCGGGCAACA AGCCCGAGTG GATGATGCTC
GAGGTCATCC CCGTGATCCC GCCGGATCTG CGCCCGCTGG TGCCGCTCGA TGGCGGCCGC
TTCGCGACCT CGGATCTCAA CGATCTCTAC CGCCGCGTCA TCAACCGCAA CAACCGCCTC
AAGCGTCTCC AGGAGCTCAA CGCTCCCGAG ATCATCATCC GCAACGAGAA GCGGATGCTG
CAGGAGGCGG TCGACGCCCT GTTCGACAAC GGCCGCCGCG GCAAGACCAT CACCGGTCCC
AACAAGCGCC CGCTCAAGTC GCTGTCCGAC ATGCTCAAGG GCAAGCAGGG CCGCTTCCGC
CAGAACCTGC TCGGCAAGCG CGTCGATTAC TCGGGCCGTT CGGTCATCGT GATCGGCCCC
GAGCTGCGCC TGCACCAGTG CGGTCTGCCC AAGAAGATGG CGCTCGAGCT GTTCACGCCC
TTCATCTACA ACAAGCTCGA GGAGCGCGGA CTGGTCACGA CCATCAAGAG CGCCAAGAAG
CTGGTGGAGA AGGAGCGTCC CGAGGTCTGG GACATCCTCG AAGAGGTGAT CAAGGAGCAC
CCGGTGCTCC TCAACCGCGC GCCCACGCTG CACCGCCTGG GCATTCAGGC CTTCGAGCCG
GTGCTCACCG AGGGCAAGGC CATCCAGCTC CACCCGCTGG TGTGCGCGGC CTTCAACGCC
GACTTCGACG GCGATCAGAT GGCCGTGCAC GTGCCGCTCT CGCTCGAGGC GCAGATGGAG
GCGCGCGTGC TCATGATGAG CACGAACAAC ATCCTCTCGC CCGCCCACGG CAAGCCGATC
ATCGTGCCCT CGCAGGACAT CGTGCTCGGT CTCTACCACC TCACCCGTGA GCGTCCCTTC
GTCCGCGGCG AGTTCCGCGA GACCGAGTTC TCGACCCAGG GCATCCGCGG CGTGTTCTCC
TCGATCGAGG AGGTGCGCAT GGCGTACGAC CACGGCGAGG CCGATCTGCA GGCCGCGATC
AAGGTGCGCG TCGAGGGTCA TGAGGAGCTC ATCAAGACCA CGGTCGGCCG CGCGCTGCTG
TACGAAATCT GCCCCGACGG CATCCCCTTC GAGGCGGTCA ACAAGGTCAT GGGCAAGAAG
CAGCTCGCCG AGCTTATCGA CCTCGTGTAC CGAAACTGCG GCCAGAAGGC CACGGTGCTG
CTGGCCGACG CGCTGCGCAC CAACGGCTAC AAATACGCGA CCATGGCCGG CGTCTCCATC
TGCATCGATG ACATGGAGAT TCCCAACGAG AAGTACCGCC TTCTCGACCG CGCCAAGTCC
GAGGTCGGCG AGATCGAGGA CCAGTACACC GAGGGTCTCA TCACCGACGG TGAGCGCTAC
AACAAGGTGG TCGACATCTG GGCGCAGGTG GCCGAGGCCA TCGCGCGCGA GATGATGAAG
AACATCAGCA CGCAGGAGTT CGAGAACCCG GAGACCGGGG AGAAGCGCGT CGCGCCTTCG
TTCAACTCCA TCTACATCAT GGCCGACTCC GGCGCCCGCG GTAGCCAGCA GCAGATGCGC
CAGCTCTCGG GGATGCGCGG CCTGATGGCC AAGCCCTCGG GCGAGATCAT CGAGACGCCG
ATCACGACCA ACTTCCGCGA GGGTCTGTCG GTGCTGCAGT ACTTCATCTC GACCCACGGC
GCGCGCAAGG GCCTGGCCGA CACCGCGCTC AAGACCGCCA ACTCGGGGTA TCTCACGCGC
CGCCTGGTCG ATGTCGCGCA GGACACGATC ATCAGCGAGT TCGACTGCGG CACCCTCGAG
GGCATCGAGA TGATGCCGCT GATCGAGGGC GGCGAGATCA TCGAGCGCCT CGGCGACCGT
ATTCTCGGAC GCGTGACCCT CGAAGAGATC GTCGATCCCT ACTCGGGCGA CGTGCTGGTG
CCGGCCAACT CGGAGATCAC CGAGGATGAG GTCCGCCTCA TCGACAACTC GGGTATCGAC
CGGGTCAAGA TCCGCTCGGT GCTGACCTGT CAGACCCGCC GCGGCATCTG CACGCTGTGC
TACGGCCGCG ACCTGGCCCG CGGACAGATG GTCAACATCG GCGAGGCGGT CGGCGTCATC
GCCGCGCAGT CCATCGGCGA GCCGGGTACG CAGCTCACCA TGCGTACCTT CCACATCGGC
GGCGTCGGTC AGATTCGCAC CGAGCAGTCC GCGCTCGAGA GCCGCAACGG CGGCGCCGTG
CGCCTCACCA ACGTCGAGGT GGTGCAGAAA GAGGGCTACT GGGTGGTCAT GAACCGCCAG
GGCGAGCTGT CGATCCTCGA CGACCTCGGC CGCGAGCGCG AGCGCTACGG TCTCCAGTAC
GGCGCCCGCC TGTTGGTGGA GGAAGGCGTG ATGGTCGATG CCGGACAGCT CCTGTCCGAG
TGGGATCCCT TCTCCATGCC CATCGTCACC GAGGTGGCCG GCGTGGTCAC CTACGGCGAT
ATCGTCGATA CCGTGACCAT GCAGGAGCAG CTCGACGAGG TCACGGGTCT GTCGCGCAAG
GTGATCACCG AGTCGAAAGA TCCCGACTCG CGTCCGCGCA TCACGCTCAA GGACGACAGC
GGCGAGACCA TCCGCCTGCG CGGCGGTGAG AACGAGGCCC GCTACTTCCT GCCGGTCGGC
GCCAACATCT ACGTCAACGA CGGCGACAAG GTCGAGGCCG GCGACGTGCT CGCCCGTATC
CCGCGCGAGA CCACCAAGAC CAAGGACATC ACCGGCGGTC TGCCCCGCGT GGCCGAGCTG
TTCGAGGCCC GCAAGCCCAA GGATCACGCG GTCATCTCCG AGATCGACGG CATGGTCCAC
TTCGGCAAGG ACACCAAGGG CAAGCGCAAG GTCATCATCC AGCCCGACGT CGGCGACCCG
CGCGAGTACC TGATCGCCAA GGGCAAGCAC CTCTCGGTGC GTGAGGGGGA CCGCGTGCGC
GCCGGCGAGG CGCTGATGGA CGGTCCCGCC AACCCGCACG ACATCCTCAA GGTGCTCGGC
GAGCGCGCGC TGGCCAAGTA CCTGGTGGAC GAGATCCAGG AGGTCTACCG CCTCCAGGGC
GTGCGCATCA ACGACAAGCA CATCGAGGCC ATCGTCCGCC AGATGCTCCG CCGCATCACG
GTGACCGATG TCGGTGACAC CAACTTCTTG ATCGACGAGC AGGTCGAAAA ACACCTGTTC
GAAGAGGAGA ACGAGCGCGT CATCGCCACC GGCGGTCAGC CCGCCAAGGG CGAGCCGCTG
CTGCTCGGTA TCACCAAGGC GTCGCTGTCC ACCGAGTCGT TCATCTCGGC GTCGTCCTTC
CAGGAGACCA CGAAGGTGCT CACCGAGGCG TCCATCAACG GCCGCGTCGA TTACCTGCGC
GGCCTCAAGG AGAACGTCAT CATGGGCCGC CTGATCCCGG CCGGCACCGG CCTGGGCGCC
TACAAGCGGC TCAACATCGA GGTCAAATCG ATAGACGGCG CGGACGAGGA GACGTCCGAG
TCGGCCGCGA GCATGCCGCT CGTCTGA
|
|---|
| Protein sequence | MKDIFNFFEK PKDPRTFSAI RIMLASPEKI RVWSHGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC NCGKYKRMKH RGVVCEKCGV EVIQSKVRRE RMGHITLATP VAHIWFLKSL
PSRIGNLLDI PLKDLEKVLY CESYIVIDPR ESGLERCELL SEERYGKLLD EVGYDAFTAG
MGAEAILQIL RDLDVHALAE QLRIEMKEVT SEAKRKKIAK RLKVVEAFRE SGNKPEWMML
EVIPVIPPDL RPLVPLDGGR FATSDLNDLY RRVINRNNRL KRLQELNAPE IIIRNEKRML
QEAVDALFDN GRRGKTITGP NKRPLKSLSD MLKGKQGRFR QNLLGKRVDY SGRSVIVIGP
ELRLHQCGLP KKMALELFTP FIYNKLEERG LVTTIKSAKK LVEKERPEVW DILEEVIKEH
PVLLNRAPTL HRLGIQAFEP VLTEGKAIQL HPLVCAAFNA DFDGDQMAVH VPLSLEAQME
ARVLMMSTNN ILSPAHGKPI IVPSQDIVLG LYHLTRERPF VRGEFRETEF STQGIRGVFS
SIEEVRMAYD HGEADLQAAI KVRVEGHEEL IKTTVGRALL YEICPDGIPF EAVNKVMGKK
QLAELIDLVY RNCGQKATVL LADALRTNGY KYATMAGVSI CIDDMEIPNE KYRLLDRAKS
EVGEIEDQYT EGLITDGERY NKVVDIWAQV AEAIAREMMK NISTQEFENP ETGEKRVAPS
FNSIYIMADS GARGSQQQMR QLSGMRGLMA KPSGEIIETP ITTNFREGLS VLQYFISTHG
ARKGLADTAL KTANSGYLTR RLVDVAQDTI ISEFDCGTLE GIEMMPLIEG GEIIERLGDR
ILGRVTLEEI VDPYSGDVLV PANSEITEDE VRLIDNSGID RVKIRSVLTC QTRRGICTLC
YGRDLARGQM VNIGEAVGVI AAQSIGEPGT QLTMRTFHIG GVGQIRTEQS ALESRNGGAV
RLTNVEVVQK EGYWVVMNRQ GELSILDDLG RERERYGLQY GARLLVEEGV MVDAGQLLSE
WDPFSMPIVT EVAGVVTYGD IVDTVTMQEQ LDEVTGLSRK VITESKDPDS RPRITLKDDS
GETIRLRGGE NEARYFLPVG ANIYVNDGDK VEAGDVLARI PRETTKTKDI TGGLPRVAEL
FEARKPKDHA VISEIDGMVH FGKDTKGKRK VIIQPDVGDP REYLIAKGKH LSVREGDRVR
AGEALMDGPA NPHDILKVLG ERALAKYLVD EIQEVYRLQG VRINDKHIEA IVRQMLRRIT
VTDVGDTNFL IDEQVEKHLF EEENERVIAT GGQPAKGEPL LLGITKASLS TESFISASSF
QETTKVLTEA SINGRVDYLR GLKENVIMGR LIPAGTGLGA YKRLNIEVKS IDGADEETSE
SAASMPLV
|
|---|
| |