| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3979 |
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| Symbol | |
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| ID | 8546375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 5483513 |
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| End bp | 5484547 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 646388651 |
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| Product | DNA-directed RNA polymerase, alpha subunit |
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| Protein accession | YP_003268371 |
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| Protein GI | 262197162 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.254038 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGAGCG CTACCGCCAC CACGACTTCT ACGACCGAGC AGACGCCCTT CATGGCGAAG
AACTGGCGTG ACCTGATCCG GCCGCGCATG CTCGAGACCG AGCAGAAGAC CGATAATTAC
GGCAAGTTCA GCTGTGAGCC GCTGGAGCGC GGCTTCGGCA CCACGCTCGG CAACTCCTTG
CGCCGCGTCC TGCTCTCGTC GCTGCAGGGT GCCGCCTTCA CGCACGTGAA GATCGAGCAC
GCGCTGCACG AGTTCTCGTC GCTTCCCGGG GTGGTGGAGG ATGTCACTGA CATCATCCTC
AACCTCAAGG AGACGATGCT CAAGGTCGAG GAAGACCGCG TCTACACCGT GCGCCTGGAG
AAGGAGGGCG AGGGCCCCTT CACCGCCGGC GACATCAGCA CGGTGACCGG CGTGAACATT
CTCAACCCCG ATCACGTCAT CGGACACCTG GCCCGCGACG GCAAGATCTC GATGGAGCTG
ATCATCGGCA CCGGCCGCGG CTACGTCTCG GCCGAGCGCC ACACCACCAG CCCGGGCGTC
GGCTACGTGC CGATCGACGC GCTGTACTCG CCGATCCGCA AGGCCAACTT CACGGTCACC
AACGCCCGCG TTGGACAGCA GACCGACTAC GATAAACTCA CCCTCGAGGT CTGGACCAAC
GGCGGCGTCA CCCCCGACGA CGCCGTCGCG TTCGCGGCCA AGATCCTCAA AGAGCAGCTC
AACATCTTCA TCAACTTCGA GGAGCAGGCC GAGCCGGTCG AGCAACACGT CGATGAGGAG
CAGGAGAAGC TCAACGAGAA TCTCTGGCGG ACCGTGGACG AGCTCGAGCT GTCGGTGCGC
TCGGCGAACT GCTTGCAGAA CGCCAACATC AAGTACATCG GCGAGCTGGT CCAGAAGTCC
GAGTCCGAGA TGCTCAAGAC CAAGAACTTC GGCCGCAAGT CGCTCAAAGA GATCAAGGAG
ATCCTCGCCG AGATGGGGCT CTCCTTGGGT ATGAAGCTCG ACAACTGGCC GGGGACGAAT
CCGCTCAAGA AATAG
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| Protein sequence | MESATATTTS TTEQTPFMAK NWRDLIRPRM LETEQKTDNY GKFSCEPLER GFGTTLGNSL
RRVLLSSLQG AAFTHVKIEH ALHEFSSLPG VVEDVTDIIL NLKETMLKVE EDRVYTVRLE
KEGEGPFTAG DISTVTGVNI LNPDHVIGHL ARDGKISMEL IIGTGRGYVS AERHTTSPGV
GYVPIDALYS PIRKANFTVT NARVGQQTDY DKLTLEVWTN GGVTPDDAVA FAAKILKEQL
NIFINFEEQA EPVEQHVDEE QEKLNENLWR TVDELELSVR SANCLQNANI KYIGELVQKS
ESEMLKTKNF GRKSLKEIKE ILAEMGLSLG MKLDNWPGTN PLKK
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