| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_3775 |
|---|
| Symbol | |
|---|
| ID | 8546168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | - |
|---|
| Start bp | 5187151 |
|---|
| End bp | 5188311 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 646388445 |
|---|
| Product | acyl-CoA dehydrogenase domain protein |
|---|
| Protein accession | YP_003268168 |
|---|
| Protein GI | 262196959 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.212433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.155443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCTGG CGCTCACGGA GGAGCAGGAG CTGATTCAGC GCACGGCGCG CGAGTTCGCC
AGCCGGGTGC TGGCGCCGCG CGCCGAGGCC CGCGACCGCG AGGGCAGCTT CCCCGAGCAG
GAGCTGCGCG CGCTGGCCGA GCTCGGCCTG CTGGGCGTGA CCGTGCCCGA GTCGCTGGGC
GGCGCCGAGG CCGACACCGT GGCTTACAGT CTGGCCATGC GCGAGCTGGC GCGGGCCGAC
GCCTCGGTGG CGGTGGCGGT CTCGGTCACG AACATGGTGG CCGCGCTGGT GGCCCAGGTG
GGCAGCGAGG CGCAGCGCAA GCAGCACGTG CCCAGGCTGG TCGACGGCAG CTACGTGTGC
GGCGCCTTTG CGCTGTCCGA GCCGCAGGCG GGCTCGGATC CGTCGGCGAT GCGCACCTCG
GCGACGCGTA CGGGTAGCGG CTGGCGGCTG CGCGGCAGCA AGCAGTGGAT CACGGGCGGC
GACCGCGCCG GGGTGATGGT GGTGTGGGCG GTGACCGATG CCGAGGCCGG CAACCGCGGC
ATCTCGGCGT TTCTGGTGCC GGGCGGCGCC GCGGGCCTGA GCGTGAGCCG CTCCGAGGAC
AAGATGGGCC TGCACGGCTC GACCACGGTG GGGCTGAGCT TCGACGACGT CGAGGTCGGC
GAGGACGCGC TGCTGGGGCG CGAGGGCGAG GGCTTCAAGT TGGCCATGAT GGCGCTCGAC
GGCGGCCGCA TCGGCATCTC GTCGCAGGCT ATCGGCATCG CCGAGGGCGC GCTCGACGCG
GCTGTCGCCT ACGCGTGCGA GCGGGTGCAG TTCGGCAAGC CCATCGGCCA GCATCAGGGC
GTGTCGCAGA TGCTGGCCGA CGCGGCCACC TGGCTCGACG CGGCCAAGCT GCTGACGCTG
CGCGCGGCCG CGCGCAAGGA TGAGGGCAAG CCCTTCAGCC AGGAGGCGTC GATGGCCAAG
CTGTTTTCCA CCGAGCACGC CGGACGCATC TGCGATATCG CGCTGCAGGT GCACGGCGGT
TATGGTTATA CCCGCGATTT CCCGGTCGAA CGGGCCTACC GGGACGTGCG CGTGACCCGC
ATCTACGAGG GCACGAGCGA GATCCAGCGC ATCGTGATCG CCCGACGACT CATCGAGCAA
CACGCCGCCC GCACGGGCTG A
|
|---|
| Protein sequence | MRLALTEEQE LIQRTAREFA SRVLAPRAEA RDREGSFPEQ ELRALAELGL LGVTVPESLG
GAEADTVAYS LAMRELARAD ASVAVAVSVT NMVAALVAQV GSEAQRKQHV PRLVDGSYVC
GAFALSEPQA GSDPSAMRTS ATRTGSGWRL RGSKQWITGG DRAGVMVVWA VTDAEAGNRG
ISAFLVPGGA AGLSVSRSED KMGLHGSTTV GLSFDDVEVG EDALLGREGE GFKLAMMALD
GGRIGISSQA IGIAEGALDA AVAYACERVQ FGKPIGQHQG VSQMLADAAT WLDAAKLLTL
RAAARKDEGK PFSQEASMAK LFSTEHAGRI CDIALQVHGG YGYTRDFPVE RAYRDVRVTR
IYEGTSEIQR IVIARRLIEQ HAARTG
|
|---|
| |